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galaxy-genome-annotation · Nov 2, 2023 · 662acf5 · 662acf5
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Showing 4 changed files with 3 additions and 195 deletions.
diff --git a/tools/repeatexplorer2/repex_full_clustering.xml b/tools/repeatexplorer2/repex_full_clustering.xml
@@ -65,7 +65,7 @@
       <param name="fastafile" value="LAS_paired_10k.fa.gz" ftype="fasta.gz"/>
       <param name="paired" value="True"/>
       <param name="taxon" value="VIRIDIPLANTAE3.0"/>
-      <output name="reportfile" file="test1_out.html">
+      <output name="reportfile">
       <assert_contents>
         <has_text text="Clustering summary"/>
       </assert_contents>
@@ -77,7 +77,7 @@
       <param name="paired" value="True"/>
       <param name="sample" value="5000"/>
       <param name="taxon" value="VIRIDIPLANTAE3.0"/>
-      <output name="reportfile" file="test2_out.html">
+      <output name="reportfile">
         <assert_contents>
           <has_text text="Clustering summary"/>
         </assert_contents>
@@ -90,7 +90,7 @@
       <param name="taxon" value="VIRIDIPLANTAE3.0"/>
       <param name="mincl" value="0.01"/>
       <param name="keep_names" value="True"/>
-      <output name="reportfile" file="test3_out.html">
+      <output name="reportfile">
         <assert_contents>
           <has_text text="Clustering summary"/>
         </assert_contents>

diff --git a/tools/repeatexplorer2/test-data/test1_out.html b/tools/repeatexplorer2/test-data/test1_out.html
diff --git a/tools/repeatexplorer2/test-data/test2_out.html b/tools/repeatexplorer2/test-data/test2_out.html
diff --git a/tools/repeatexplorer2/test-data/test3_out.html b/tools/repeatexplorer2/test-data/test3_out.html