Allow nodePropertyExtractorArray objects to specify numerical column values
#568
Workflow file for this run
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| name: 'CI/CD' | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - 'master' | |
| paths: | |
| - 'Makefile' | |
| - 'source/**' | |
| - 'source/Bivar/**' | |
| - 'source/ISO_Varying_String/**' | |
| - 'source/gslODEInitVal2/**' | |
| - 'source/NSWC/**' | |
| - 'source/pFq/**' | |
| - 'source/gslSpecFuncApprox/**' | |
| - 'source/FFTlog/**' | |
| - 'perl/**' | |
| - 'perl/File/**' | |
| - 'perl/Galacticus/**' | |
| - 'perl/Galacticus/Launch/**' | |
| - 'perl/Galacticus/Constraints/**' | |
| - 'perl/Galacticus/Build/**' | |
| - 'perl/Galacticus/Build/Components/**' | |
| - 'perl/Galacticus/Build/Components/Classes/**' | |
| - 'perl/Galacticus/Build/Components/Implementations/**' | |
| - 'perl/Galacticus/Build/Components/Properties/**' | |
| - 'perl/Galacticus/Build/Components/TreeNodes/**' | |
| - 'perl/Galacticus/Build/Components/Hierarchy/**' | |
| - 'perl/Galacticus/Build/SourceTree/**' | |
| - 'perl/Galacticus/Build/SourceTree/Parse/**' | |
| - 'perl/Galacticus/Build/SourceTree/Analyze/**' | |
| - 'perl/Galacticus/Build/SourceTree/Process/**' | |
| - 'perl/Galacticus/Build/SourceTree/Process/FunctionClass/**' | |
| - 'perl/List/**' | |
| - 'perl/Sort/**' | |
| - 'perl/LaTeX/**' | |
| - 'perl/IO/**' | |
| - 'perl/IO/Compress/**' | |
| - 'perl/System/**' | |
| - 'perl/Fortran/**' | |
| - 'scripts/build/**' | |
| - 'schema/**' | |
| concurrency: | |
| group: cicd-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| # Build and deploy | |
| ## Linux | |
| ### Static executable and test codes | |
| Build-Executable-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS=$GALACTICUS_FCFLAGS -static" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| export BUILDPATH=./work/build | |
| set -o pipefail | |
| make GALACTICUS_BUILD_OPTION=compileprof -j2 all 2>&1 | tee build.log | |
| set +o pipefail | |
| chmod u=wrx ./scripts/build/buildProfiler.pl | |
| ./scripts/build/buildProfiler.pl build.log buildProfile.html --durationMinimum 20 | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| path: 'Galacticus.exe' | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-execs | |
| path: 'tests.*.exe' | |
| - name: Upload build profile | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: build-profile | |
| path: 'buildProfile.html' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Non-static executable | |
| Build-Executable-Linux-Non-Static: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| export BUILDPATH=./work/build | |
| set -o pipefail | |
| make -j2 Galacticus.exe 2>&1 | tee build.log | |
| set +o pipefail | |
| ! grep -n -C 5 Error: build.log | |
| ! grep -n -C 5 Warning: build.log | |
| ! grep -v 'is up to date' build.log | grep -n -C 5 make: | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-exec-non-static | |
| path: 'Galacticus.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Executable instrumented | |
| Build-Executables-Instrumented-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| export GALACTICUS_FCFLAGS="$GALACTICUS_FCFLAGS -pg" | |
| export GALACTICUS_CFLAGS="$GALACTICUS_CFLAGS -pg" | |
| export GALACTICUS_CPPFLAGS="$GALACTICUS_CPPFLAGS -pg" | |
| make -j2 Galacticus.exe | |
| - name: Upload executables | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-exec-instrumented | |
| path: 'Galacticus.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Executable MPI | |
| Build-Executables-MPI-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| make -j2 GALACTICUS_BUILD_OPTION=MPI Galacticus.exe tests.MPI.exe tests.radiative_transfer.atomic_matter.state_solver.exe | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-exec-MPI | |
| path: 'Galacticus.exe' | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-execs-MPI | |
| path: 'tests.*.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Executable debugging | |
| Build-Executables-Debugging-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS+=\ -DDEBUGGING" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| make -j2 Galacticus.exe tests.debugging.exe | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-execs-debugging | |
| path: 'tests.*.exe' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Library | |
| Build-Library-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max-old-space-size=5120" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Build the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| make -j2 GALACTICUS_BUILD_OPTION=lib libgalacticus.so | |
| - name: Package the code | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir galacticus | |
| mkdir galacticus/lib | |
| mkdir galacticus/python | |
| # Find all dynamic libraries needed (filtering out some system libs) and copy to our folder. | |
| ldd libgalacticus.so | awk '{if (NF == 4) print $3}' | grep -v -e /libc.so -e /libdl.so -e /libm.so -e /libpthread.so -e /librt.so | xargs -n 1 -i{} cp {} galacticus/lib/ | |
| mv galacticus.py galacticus/python/ | |
| mv libgalacticus.so galacticus/lib/ | |
| tar cvfj libgalacticus.tar.bz2 galacticus | |
| - name: Upload library | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-library | |
| path: 'libgalacticus.tar.bz2' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Docker image | |
| Build-Docker-Linux: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| packages: write | |
| steps: | |
| - name: "Detect PR build" | |
| id: detectBranch | |
| run: | | |
| if [[ "${{ github.event_name }}" == "pull_request" ]]; then | |
| echo Running on a PR - will build, but not push | |
| echo "doPush=false" >> "$GITHUB_OUTPUT" | |
| else | |
| echo Running on a non-PR - will build and push | |
| echo "doPush=true" >> "$GITHUB_OUTPUT" | |
| fi | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: galacticusorg/galacticus | |
| - name: Build and push Docker image | |
| uses: docker/build-push-action@v4 | |
| with: | |
| push: ${{ steps.detectBranch.outputs.doPush }} | |
| tags: ghcr.io/galacticusorg/galacticus:latest | |
| labels: ${{ steps.meta.outputs.labels }} | |
| ### Documentation | |
| Build-Documentation-Linux: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Build the docs | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| ./scripts/doc/Build_Documentation.sh -f yes -p 2 | |
| - name: Upload docs | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-docs | |
| path: | | |
| ./doc/Galacticus_Usage.pdf | |
| ./doc/Galacticus_Physics.pdf | |
| ./doc/Galacticus_Development.pdf | |
| ./doc/Galacticus_Source.pdf | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Tools | |
| Build-Tools: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS+=\ -static" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Build tools | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir -p $GALACTICUS_DATA_PATH/dynamic | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe parameters/buildTools.xml | |
| cd $GALACTICUS_DATA_PATH | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| tar cfj tools.tar.bz2 \ | |
| dynamic/CAMB-${cambVersion}/fortran/camb \ | |
| dynamic/AxionCAMB/camb \ | |
| dynamic/class_public-${classVersion}/class \ | |
| dynamic/RecFast/recfast.exe \ | |
| dynamic/RecFast/currentVersion \ | |
| dynamic/c${cloudyVersion}/source/cloudy.exe \ | |
| dynamic/c${cloudyVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/src/autosps.exe \ | |
| dynamic/fsps-${fspsVersion}/dust \ | |
| dynamic/fsps-${fspsVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/nebular \ | |
| dynamic/fsps-${fspsVersion}/SPECTRA \ | |
| dynamic/fsps-${fspsVersion}/OUTPUTS \ | |
| dynamic/fsps-${fspsVersion}/ISOCHRONES | |
| - name: Upload tools | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-tools | |
| path: ./datasets/tools.tar.bz2 | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ## MacOS | |
| ### Static executable | |
| Build-Executable-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV | |
| echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV | |
| echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Install MacPorts | |
| run: | | |
| curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg | |
| sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target / | |
| rm ./MacPorts-2.7.1-11-BigSur.pkg | |
| - name: Install guile | |
| run: sudo port install guile18 | |
| - name: Install libmatheval | |
| run: | | |
| curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz | |
| tar xvfz libmatheval-1.1.12.tar.gz | |
| cd libmatheval-1.1.12 | |
| # Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in | |
| sed -E -i~ s/"-lguile"/"-lguile18"/ configure | |
| sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c | |
| # Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12 | |
| - name: Install qhull | |
| run: | | |
| curl -L http://www.qhull.org/download/qhull-2020-src-8.0.2.tgz --output qhull-2020-src-8.0.2.tgz | |
| tar xvfz qhull-2020-src-8.0.2.tgz | |
| cd qhull-2020.2 | |
| make -j3 CC=gcc-11 CXX=g++-11 | |
| sudo make install | |
| cd .. | |
| rm -rf qhull-2020-src-8.0.2.tgz qhull-2020.2 | |
| - name: Install GSL | |
| run: | | |
| curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz | |
| tar xvfz gsl-2.6.tar.gz | |
| cd gsl-2.6 | |
| CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf gsl-2.6 gsl-2.6.tar.gz | |
| - name: Install HDF5 | |
| run: | | |
| curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz | |
| tar -vxzf hdf5-1.8.20.tar.gz | |
| cd hdf5-1.8.20 | |
| CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz | |
| - name: Install FoX | |
| run: | | |
| curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz | |
| tar xvfz FoX-4.1.0.tar.gz | |
| cd fox-4.1.0 | |
| FC=gfortran-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf fox-4.1.0 FoX-4.1.0.tar.gz | |
| - name: Install FFTW3 | |
| run: | | |
| curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz | |
| tar xvfz fftw-3.3.4.tar.gz | |
| cd fftw-3.3.4 | |
| F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j4 | |
| sudo make install | |
| cd .. | |
| rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz | |
| - name: Install ANN | |
| run: | | |
| curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz | |
| tar xvfz ann_1.1.2.tar.gz | |
| cd ann_1.1.2 | |
| sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config | |
| make macosx-g++ | |
| cp bin/* /usr/local/bin/. | |
| cp lib/* /usr/local/lib/. | |
| cp -R include/* /usr/local/include/. | |
| - name: Install IO::Socket::SSL | |
| run: | | |
| curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz | |
| tar xvfz Net-SSLeay-1.90.tar.gz | |
| cd Net-SSLeay-1.90 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz | |
| tar xvfz IO-Socket-SSL-1.966.tar.gz | |
| cd IO-Socket-SSL-1.966 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/M/MK/MKODERER/Sys-CPU-0.52.tar.gz --output Sys-CPU-0.52.tar.gz | |
| tar xvfz Sys-CPU-0.52.tar.gz | |
| cd Sys-CPU-0.52 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| - name: Install CPAN | |
| run: | | |
| sudo perl -MCPAN -e shell | |
| sudo perl -MCPAN -e 'install Bundle::CPAN' | |
| - name: Install Perl modules | |
| run: | | |
| export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE | |
| sudo perl -MCPAN -e 'force("install","NestedMap")' | |
| sudo perl -MCPAN -e 'force("install","Scalar::Util")' | |
| sudo perl -MCPAN -e 'force("install","Term::ANSIColor")' | |
| sudo perl -MCPAN -e 'force("install","Text::Table")' | |
| sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")' | |
| sudo perl -MCPAN -e 'install Path::Tiny' | |
| sudo perl -MCPAN -e 'install PkgConfig' | |
| sudo perl -MCPAN -e 'install Alien::Base::Wrapper' | |
| sudo perl -MCPAN -e 'force("install","Alien::Libxml2")' | |
| sudo perl -MCPAN -e 'install XML::LibXML::SAX' | |
| sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")' | |
| sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")' | |
| sudo perl -MCPAN -e 'force("install","Text::Template")' | |
| sudo perl -MCPAN -e 'force("install","List::Uniq")' | |
| sudo perl -MCPAN -e 'force("install","IO::Util")' | |
| sudo perl -MCPAN -e 'force("install","Class::Util")' | |
| sudo perl -MCPAN -e 'force("install","CGI::Builder")' | |
| sudo perl -MCPAN -e 'force("install","Simple")' | |
| sudo perl -MCPAN -e 'force("install","Readonly")' | |
| sudo perl -MCPAN -e 'force("install","File::Slurp")' | |
| sudo perl -MCPAN -e 'force("install","XML::Simple")' | |
| sudo perl -MCPAN -e 'force("install","List::MoreUtils")' | |
| sudo perl -MCPAN -e 'force("install","Clone")' | |
| sudo perl -MCPAN -e 'force("install","IO::Scalar")' | |
| sudo perl -MCPAN -e 'force("install","Regexp::Common")' | |
| sudo perl -MCPAN -e 'install LaTeX::Encode' | |
| sudo perl -MCPAN -e 'install Sub::Identify' | |
| - name: Build Galacticus | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp" | |
| export BUILDPATH=./work/build | |
| set -o pipefail | |
| make -j3 Galacticus.exe tests.hashes.cryptographic.exe 2>&1 | tee build.log | |
| ./scripts/build/staticRelinker.pl `grep '\-o Galacticus.exe' build.log` | |
| ./scripts/build/staticRelinker.pl `grep '\-o tests.hashes.cryptographic.exe' build.log` | |
| dsymutil -o Galacticus.exe.dSYM Galacticus.exe | |
| zip -r debugSymbolsMacOS.zip Galacticus.exe.dSYM | |
| mv Galacticus.exe Galacticus_MacOS.exe | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-exec-MacOS | |
| path: 'Galacticus_MacOS.exe' | |
| - name: Upload test code executables | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-execs-MacOS | |
| path: 'tests.*.exe' | |
| - name: Upload Galacticus debug symbols | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-debug-MacOS | |
| path: 'debugSymbolsMacOS.zip' | |
| ## Library | |
| Build-Library-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV | |
| echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV | |
| echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max-old-space-size=5120" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Install MacPorts | |
| run: | | |
| curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg | |
| sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target / | |
| rm ./MacPorts-2.7.1-11-BigSur.pkg | |
| - name: Install guile | |
| run: sudo port install guile18 | |
| - name: Install libmatheval | |
| run: | | |
| curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz | |
| tar xvfz libmatheval-1.1.12.tar.gz | |
| cd libmatheval-1.1.12 | |
| # Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in | |
| sed -E -i~ s/"-lguile"/"-lguile18"/ configure | |
| sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c | |
| # Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12 | |
| - name: Install qhull | |
| run: | | |
| curl -L http://www.qhull.org/download/qhull-2020-src-8.0.2.tgz --output qhull-2020-src-8.0.2.tgz | |
| tar xvfz qhull-2020-src-8.0.2.tgz | |
| cd qhull-2020.2 | |
| make -j3 CC=gcc-11 CXX=g++-11 | |
| sudo make install | |
| cd .. | |
| rm -rf qhull-2020-src-8.0.2.tgz qhull-2020.2 | |
| - name: Install GSL | |
| run: | | |
| curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz | |
| tar xvfz gsl-2.6.tar.gz | |
| cd gsl-2.6 | |
| CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf gsl-2.6 gsl-2.6.tar.gz | |
| - name: Install HDF5 | |
| run: | | |
| curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz | |
| tar -vxzf hdf5-1.8.20.tar.gz | |
| cd hdf5-1.8.20 | |
| CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz | |
| - name: Install FoX | |
| run: | | |
| curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz | |
| tar xvfz FoX-4.1.0.tar.gz | |
| cd fox-4.1.0 | |
| FC=gfortran-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf fox-4.1.0 FoX-4.1.0.tar.gz | |
| - name: Install FFTW3 | |
| run: | | |
| curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz | |
| tar xvfz fftw-3.3.4.tar.gz | |
| cd fftw-3.3.4 | |
| F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j4 | |
| sudo make install | |
| cd .. | |
| rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz | |
| - name: Install ANN | |
| run: | | |
| curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz | |
| tar xvfz ann_1.1.2.tar.gz | |
| cd ann_1.1.2 | |
| sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config | |
| make macosx-g++ | |
| cp bin/* /usr/local/bin/. | |
| cp lib/* /usr/local/lib/. | |
| cp -R include/* /usr/local/include/. | |
| - name: Install IO::Socket::SSL | |
| run: | | |
| curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz | |
| tar xvfz Net-SSLeay-1.90.tar.gz | |
| cd Net-SSLeay-1.90 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz | |
| tar xvfz IO-Socket-SSL-1.966.tar.gz | |
| cd IO-Socket-SSL-1.966 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/M/MK/MKODERER/Sys-CPU-0.52.tar.gz --output Sys-CPU-0.52.tar.gz | |
| tar xvfz Sys-CPU-0.52.tar.gz | |
| cd Sys-CPU-0.52 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| - name: Install CPAN | |
| run: | | |
| sudo perl -MCPAN -e shell | |
| sudo perl -MCPAN -e 'install Bundle::CPAN' | |
| - name: Install Perl modules | |
| run: | | |
| export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE | |
| sudo perl -MCPAN -e 'force("install","NestedMap")' | |
| sudo perl -MCPAN -e 'force("install","Scalar::Util")' | |
| sudo perl -MCPAN -e 'force("install","Term::ANSIColor")' | |
| sudo perl -MCPAN -e 'force("install","Text::Table")' | |
| sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")' | |
| sudo perl -MCPAN -e 'install Path::Tiny' | |
| sudo perl -MCPAN -e 'install PkgConfig' | |
| sudo perl -MCPAN -e 'install Alien::Base::Wrapper' | |
| sudo perl -MCPAN -e 'force("install","Alien::Libxml2")' | |
| sudo perl -MCPAN -e 'install XML::LibXML::SAX' | |
| sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")' | |
| sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")' | |
| sudo perl -MCPAN -e 'force("install","Text::Template")' | |
| sudo perl -MCPAN -e 'force("install","List::Uniq")' | |
| sudo perl -MCPAN -e 'force("install","IO::Util")' | |
| sudo perl -MCPAN -e 'force("install","Class::Util")' | |
| sudo perl -MCPAN -e 'force("install","CGI::Builder")' | |
| sudo perl -MCPAN -e 'force("install","Simple")' | |
| sudo perl -MCPAN -e 'force("install","Readonly")' | |
| sudo perl -MCPAN -e 'force("install","File::Slurp")' | |
| sudo perl -MCPAN -e 'force("install","XML::Simple")' | |
| sudo perl -MCPAN -e 'force("install","List::MoreUtils")' | |
| sudo perl -MCPAN -e 'force("install","Clone")' | |
| sudo perl -MCPAN -e 'force("install","IO::Scalar")' | |
| sudo perl -MCPAN -e 'force("install","Regexp::Common")' | |
| sudo perl -MCPAN -e 'install LaTeX::Encode' | |
| sudo perl -MCPAN -e 'install Sub::Identify' | |
| - name: Build Galacticus | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp" | |
| make -j3 GALACTICUS_BUILD_OPTION=lib libgalacticus.so | |
| - name: Package the code | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp" | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir galacticus | |
| mkdir galacticus/lib | |
| mkdir galacticus/python | |
| # Find all dynamic libraries needed (filtering out any non-"local" ones) and copy to our folder. | |
| otool -L libgalacticus.so | awk '{if (NR > 1) print $1}' | grep -e /usr/local -e /opt/local | xargs -n 1 -I{} cp {} galacticus/lib/ | |
| mv galacticus.py galacticus/python/ | |
| mv libgalacticus.so galacticus/lib/ | |
| zip -r libgalacticusMacOS.zip galacticus | |
| - name: Upload library | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-library-MacOS | |
| path: 'libgalacticusMacOS.zip' | |
| ### Tools | |
| Build-Tools-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -static -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV | |
| echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV | |
| echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Install MacPorts | |
| run: | | |
| curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg | |
| sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target / | |
| rm ./MacPorts-2.7.1-11-BigSur.pkg | |
| - name: Install guile | |
| run: sudo port install guile18 | |
| - name: Install libmatheval | |
| run: | | |
| curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz | |
| tar xvfz libmatheval-1.1.12.tar.gz | |
| cd libmatheval-1.1.12 | |
| # Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in | |
| sed -E -i~ s/"-lguile"/"-lguile18"/ configure | |
| sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c | |
| # Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12 | |
| - name: Install md5sum | |
| run: sudo port install md5sha1sum | |
| - name: Install GSL | |
| run: | | |
| curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz | |
| tar xvfz gsl-2.6.tar.gz | |
| cd gsl-2.6 | |
| CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| rm -rf gsl-2.6 gsl-2.6.tar.gz | |
| - name: Install HDF5 | |
| run: | | |
| curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz | |
| tar -vxzf hdf5-1.8.20.tar.gz | |
| cd hdf5-1.8.20 | |
| CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production | |
| make -j3 | |
| sudo make install | |
| rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz | |
| - name: Install FoX | |
| run: | | |
| curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz | |
| tar xvfz FoX-4.1.0.tar.gz | |
| cd fox-4.1.0 | |
| FC=gfortran-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| rm -rf fox-4.1.0 FoX-4.1.0.tar.gz | |
| - name: Install FFTW3 | |
| run: | | |
| curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz | |
| tar xvfz fftw-3.3.4.tar.gz | |
| cd fftw-3.3.4 | |
| F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j4 | |
| sudo make install | |
| rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz | |
| - name: Install ANN | |
| run: | | |
| curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz | |
| tar xvfz ann_1.1.2.tar.gz | |
| cd ann_1.1.2 | |
| sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config | |
| make macosx-g++ | |
| cp bin/* /usr/local/bin/. | |
| cp lib/* /usr/local/lib/. | |
| cp -R include/* /usr/local/include/. | |
| - name: Install IO::Socket::SSL | |
| run: | | |
| curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz | |
| tar xvfz Net-SSLeay-1.90.tar.gz | |
| cd Net-SSLeay-1.90 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz | |
| tar xvfz IO-Socket-SSL-1.966.tar.gz | |
| cd IO-Socket-SSL-1.966 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| - name: Install CPAN | |
| run: | | |
| sudo perl -MCPAN -e shell | |
| sudo perl -MCPAN -e 'install Bundle::CPAN' | |
| - name: Install Perl modules | |
| run: | | |
| export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE | |
| sudo perl -MCPAN -e 'force("install","NestedMap")' | |
| sudo perl -MCPAN -e 'force("install","Scalar::Util")' | |
| sudo perl -MCPAN -e 'force("install","Term::ANSIColor")' | |
| sudo perl -MCPAN -e 'force("install","Text::Table")' | |
| sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")' | |
| sudo perl -MCPAN -e 'install Path::Tiny' | |
| sudo perl -MCPAN -e 'install PkgConfig' | |
| sudo perl -MCPAN -e 'install Alien::Base::Wrapper' | |
| sudo perl -MCPAN -e 'force("install","Alien::Libxml2")' | |
| sudo perl -MCPAN -e 'install XML::LibXML::SAX' | |
| sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")' | |
| sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")' | |
| sudo perl -MCPAN -e 'force("install","Text::Template")' | |
| sudo perl -MCPAN -e 'force("install","List::Uniq")' | |
| sudo perl -MCPAN -e 'force("install","IO::Util")' | |
| sudo perl -MCPAN -e 'force("install","Class::Util")' | |
| sudo perl -MCPAN -e 'force("install","CGI::Builder")' | |
| sudo perl -MCPAN -e 'force("install","Simple")' | |
| sudo perl -MCPAN -e 'force("install","Readonly")' | |
| sudo perl -MCPAN -e 'force("install","File::Slurp")' | |
| sudo perl -MCPAN -e 'force("install","XML::Simple")' | |
| sudo perl -MCPAN -e 'force("install","List::MoreUtils")' | |
| sudo perl -MCPAN -e 'force("install","Clone")' | |
| sudo perl -MCPAN -e 'force("install","IO::Scalar")' | |
| sudo perl -MCPAN -e 'force("install","Regexp::Common")' | |
| sudo perl -MCPAN -e 'install LaTeX::Encode' | |
| sudo perl -MCPAN -e 'install Sub::Identify' | |
| sudo perl -MCPAN -e 'install Sys::CPU' | |
| - name: Build Galacticus | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include" | |
| make -j3 Galacticus.exe | |
| - name: Build tools | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include" | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| mkdir -p $GALACTICUS_DATA_PATH/dynamic | |
| set -o pipefail | |
| ./Galacticus.exe parameters/buildTools.xml 2>&1 | tee build.log | |
| cd $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion}/fortran/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -cpp -Ofast -fopenmp -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib -JRelease -IRelease/ -I"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" Release/inidriver.o Release/libcamb.a -L"/Users/runner/work/galacticus/galacticus/datasets/dynamic/CAMB-${cambVersion}/fortran/../forutils/Release/" -lforutils -o camb | |
| cd $GALACTICUS_DATA_PATH/dynamic/AxionCAMB/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 -O3 -fintrinsic-modules-path /usr/local/include -L/usr/local/lib -L/opt/local/lib constants.o utils.o subroutines.o inifile.o power_tilt.o recfast_axion.o reionization.o modules.o bessels.o equations_ppf.o halofit_ppf.o lensing.o SeparableBispectrum.o cmbmain.o camb.o axion_background.o inidriver_axion.F90 -o camb | |
| cd $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion}/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o class ' $GALACTICUS_EXEC_PATH/build.log` | |
| cd $GALACTICUS_DATA_PATH/dynamic/RecFast/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl gfortran-11 recfast.for -o recfast.exe -O3 -ffixed-form -ffixed-line-length-none | |
| cd $GALACTICUS_DATA_PATH/dynamic/c${cloudyVersion}/source/ | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o cloudy.exe' $GALACTICUS_EXEC_PATH/build.log` | |
| cd $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion}/src | |
| $GALACTICUS_EXEC_PATH/scripts/build/staticRelinker.pl `grep -E '\-o autosps.exe' $GALACTICUS_EXEC_PATH/build.log` | |
| cd $GALACTICUS_DATA_PATH | |
| zip -r toolsMacOS.zip \ | |
| dynamic/CAMB-${cambVersion}/fortran/camb \ | |
| dynamic/AxionCAMB/camb \ | |
| dynamic/class_public-${classVersion}/class \ | |
| dynamic/RecFast/recfast.exe \ | |
| dynamic/RecFast/currentVersion \ | |
| dynamic/c${cloudyVersion}/source/cloudy.exe \ | |
| dynamic/c${cloudyVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/src/autosps.exe \ | |
| dynamic/fsps-${fspsVersion}/dust \ | |
| dynamic/fsps-${fspsVersion}/data \ | |
| dynamic/fsps-${fspsVersion}/nebular \ | |
| dynamic/fsps-${fspsVersion}/SPECTRA \ | |
| dynamic/fsps-${fspsVersion}/OUTPUTS \ | |
| dynamic/fsps-${fspsVersion}/ISOCHRONES | |
| - name: Upload Galacticus executable | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: galacticus-tools-MacOS | |
| path: './datasets/toolsMacOS.zip' | |
| - run: echo "This job's status is ${{ job.status }}." | |
| # Benchmarks | |
| Benchmark-Dark-Matter-Only-Subhalos: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt install -y time | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./benchmark-darkMatterOnlySubhalos.pl | |
| set -o pipefail | |
| ./benchmark-darkMatterOnlySubhalos.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - name: Upload benchmark result | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: benchmark-darkMatterOnlySubhalos | |
| path: testSuite/outputs/benchmark_darkMatterOnlySubhalos.json | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Benchmark-Milky-Way-Model: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: benchmarks-milkyWay-${{ github.run_id }} | |
| restore-keys: | | |
| benchmarks-milkyWay | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt install -y time | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./benchmark-milkyWay.pl | |
| set -o pipefail | |
| ./benchmark-milkyWay.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - name: Upload benchmark result | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: benchmark-milkyWay | |
| path: testSuite/outputs/benchmark_milkyWay.json | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - run: echo "This job's status is ${{ job.status }}." | |
| # Profiling | |
| Profile-Dark-Matter-Only-Subhalos: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/galacticusorg/buildenv:latest | |
| options: --privileged | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade && apt autoremove | |
| apt install -y linux-tools-$(uname -r) linux-tools-generic bzip2 | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_darkMatterOnlySubHalos.xml | |
| perf record -g -e cycles --call-graph dwarf -F 500 -o ./testSuite/outputs/darkMatterOnlySubhalos.perf.data ./Galacticus.exe ./testSuite/parameters/benchmark_darkMatterOnlySubHalos.xml | |
| perf script -i ./testSuite/outputs/darkMatterOnlySubhalos.perf.data > ./testSuite/outputs/darkMatterOnlySubhalos.perf | |
| du -sh ./testSuite/outputs/darkMatterOnlySubhalos.perf | |
| bzip2 ./testSuite/outputs/darkMatterOnlySubhalos.perf | |
| - name: Upload results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: perf-darkMatterOnlySubhalos | |
| path: './testSuite/outputs/darkMatterOnlySubhalos.perf.bz2' | |
| Profile-Milky-Way-Model: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/galacticusorg/buildenv:latest | |
| options: --privileged | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: benchmarks-milkyWay-${{ github.run_id }} | |
| restore-keys: | | |
| benchmarks-milkyWay | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade && apt autoremove | |
| apt install -y linux-tools-$(uname -r) linux-tools-generic bzip2 | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay.xml | |
| perf record -g -e cycles --call-graph dwarf -F 100 -o ./testSuite/outputs/milkyWay.perf.data ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay.xml | |
| perf script -i ./testSuite/outputs/milkyWay.perf.data > ./testSuite/outputs/milkyWay.perf | |
| du -sh ./testSuite/outputs/milkyWay.perf | |
| bzip2 ./testSuite/outputs/milkyWay.perf | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - name: Upload results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: perf-milkyWay | |
| path: './testSuite/outputs/milkyWay.perf.bz2' | |
| Profile-Milky-Way-SIDM-Model: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/galacticusorg/buildenv:latest | |
| options: --privileged | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: benchmarks-SIDM-milkyWay-${{ github.run_id }} | |
| restore-keys: | | |
| benchmarks-SIDM-milkyWay | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade && apt autoremove | |
| apt install -y linux-tools-$(uname -r) linux-tools-generic bzip2 | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay_SIDM.xml | |
| perf record -g -e cycles --call-graph dwarf -F 100 -o ./testSuite/outputs/milkyWay_SIDM.perf.data ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay_SIDM.xml | |
| perf script -i ./testSuite/outputs/milkyWay_SIDM.perf.data > ./testSuite/outputs/milkyWay_SIDM.perf | |
| du -sh ./testSuite/outputs/milkyWay_SIDM.perf | |
| bzip2 ./testSuite/outputs/milkyWay_SIDM.perf | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - name: Upload results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: perf-milkyWay-SIDM | |
| path: './testSuite/outputs/milkyWay_SIDM.perf.bz2' | |
| Profile-Dark-Matter-Only-Subhalos-GProf: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/galacticusorg/buildenv:latest | |
| options: --privileged | |
| needs: Build-Executables-Instrumented-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-instrumented | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt install -y bzip2 | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_darkMatterOnlySubHalos.xml | |
| rm gmon.out | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_darkMatterOnlySubHalos.xml | |
| gprof ./Galacticus.exe gmon.out > ./testSuite/outputs/darkMatterOnlySubhalos.gprof | |
| du -sh ./testSuite/outputs/darkMatterOnlySubhalos.gprof | |
| bzip2 ./testSuite/outputs/darkMatterOnlySubhalos.gprof | |
| - name: Upload results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: perf-darkMatterOnlySubhalos-gprof | |
| path: './testSuite/outputs/darkMatterOnlySubhalos.gprof.bz2' | |
| Profile-Milky-Way-GProf: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/galacticusorg/buildenv:latest | |
| options: --privileged | |
| needs: Build-Executables-Instrumented-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: benchmarks-milkyWay-${{ github.run_id }} | |
| restore-keys: | | |
| benchmarks-milkyWay | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-instrumented | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt install -y bzip2 | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay.xml | |
| rm gmon.out | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay.xml | |
| gprof ./Galacticus.exe gmon.out > ./testSuite/outputs/milkyWay.gprof | |
| du -sh ./testSuite/outputs/milkyWay.gprof | |
| bzip2 ./testSuite/outputs/milkyWay.gprof | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - name: Upload results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: perf-milkyWay-gprof | |
| path: './testSuite/outputs/milkyWay.gprof.bz2' | |
| Profile-Milky-Way-SIDM-GProf: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/galacticusorg/buildenv:latest | |
| options: --privileged | |
| needs: Build-Executables-Instrumented-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: benchmarks-SIDM-milkyWay-${{ github.run_id }} | |
| restore-keys: | | |
| benchmarks-SIDM-milkyWay | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-instrumented | |
| - name: Install tools | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt install -y bzip2 | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run benchmark | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay_SIDM.xml | |
| rm gmon.out | |
| ./Galacticus.exe ./testSuite/parameters/benchmark_milkyWay_SIDM.xml | |
| gprof ./Galacticus.exe gmon.out > ./testSuite/outputs/milkyWay_SIDM.gprof | |
| du -sh ./testSuite/outputs/milkyWay_SIDM.gprof | |
| bzip2 ./testSuite/outputs/milkyWay_SIDM.gprof | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - name: Upload results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: perf-milkyWay-SIDM-gprof | |
| path: './testSuite/outputs/milkyWay_SIDM.gprof.bz2' | |
| # Validation | |
| Validate-Dark-Matter-Only-Subhalos: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run validation | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./validate-darkMatterOnlySubhalos.pl | |
| set -o pipefail | |
| ./validate-darkMatterOnlySubhalos.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - name: Upload validation result | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: validation-darkMatterOnlySubhalos | |
| path: | | |
| ./testSuite/outputs/validate_darkMatterOnlySubhalos.json | |
| ./testSuite/outputs/results_darkMatterOnlySubhalos.json | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Validate-Milky-Way-Model: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: benchmarks-milkyWay-${{ github.run_id }} | |
| restore-keys: | | |
| benchmarks-milkyWay | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run validation | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./validate-milkyWay.pl | |
| set -o pipefail | |
| ./validate-milkyWay.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - name: Upload validation result | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: validation-milkyWayModel | |
| path: | | |
| ./testSuite/outputs/validate_milkyWayModel.json | |
| ./testSuite/outputs/results_milkyWayModel.json | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - run: echo "This job's status is ${{ job.status }}." | |
| # Tests | |
| ## Linux | |
| ### Test Codes | |
| Test-Nodes: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.nodes.exe | |
| set -o pipefail | |
| ./tests.nodes.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Parameters: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.parameters.exe | |
| set -o pipefail | |
| ./tests.parameters.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Files: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.files.exe | |
| set -o pipefail | |
| ./tests.files.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-IO-HDF5: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.IO.HDF5.exe | |
| set -o pipefail | |
| ./tests.IO.HDF5.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-IO-XML: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.IO.XML.exe | |
| set -o pipefail | |
| ./tests.IO.XML.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-ODE-Solver: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.ODE_solver.exe | |
| set -o pipefail | |
| ./tests.ODE_solver.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Random: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.random.exe | |
| set -o pipefail | |
| ./tests.random.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Random-Quasi: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.random.quasi.exe | |
| set -o pipefail | |
| ./tests.random.quasi.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Arrays: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.arrays.exe | |
| set -o pipefail | |
| ./tests.arrays.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Meshes: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.meshes.exe | |
| set -o pipefail | |
| ./tests.meshes.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Convex-Hulls: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.convex_hulls.exe | |
| set -o pipefail | |
| ./tests.convex_hulls.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Comparisons: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.comparisons.exe | |
| set -o pipefail | |
| ./tests.comparisons.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Geometry-Coordinate-Systems: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.geometry.coordinate_systems.exe | |
| set -o pipefail | |
| ./tests.geometry.coordinate_systems.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Hashes: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.hashes.exe | |
| set -o pipefail | |
| ./tests.hashes.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Hashes-Perfect: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.hashes.perfect.exe | |
| set -o pipefail | |
| ./tests.hashes.perfect.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Regular-Expressions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.regular_expressions.exe | |
| set -o pipefail | |
| ./tests.regular_expressions.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Hashes-Cryptographic: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.hashes.cryptographic.exe | |
| set -o pipefail | |
| ./tests.hashes.cryptographic.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Integration: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.integration.exe | |
| set -o pipefail | |
| ./tests.integration.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Integration2: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.integration2.exe | |
| set -o pipefail | |
| ./tests.integration2.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Differentiation: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.differentiation.exe | |
| set -o pipefail | |
| ./tests.differentiation.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Tables: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.tables.exe | |
| set -o pipefail | |
| ./tests.tables.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Interpolation: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.interpolation.exe | |
| set -o pipefail | |
| ./tests.interpolation.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Interpolation-2D: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.interpolation.2D.exe | |
| set -o pipefail | |
| ./tests.interpolation.2D.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Make-Ranges: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.make_ranges.exe | |
| set -o pipefail | |
| ./tests.make_ranges.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Mass-Distributions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.mass_distributions.exe | |
| set -o pipefail | |
| ./tests.mass_distributions.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Math-Special-Functions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.math_special_functions.exe | |
| set -o pipefail | |
| ./tests.math_special_functions.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Math-Distributions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.math_distributions.exe | |
| set -o pipefail | |
| ./tests.math_distributions.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Math-Fast: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.math.fast.exe | |
| set -o pipefail | |
| ./tests.math.fast.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Math-Arithmetic: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.math.arithmetic.exe | |
| set -o pipefail | |
| ./tests.math.arithmetic.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Math-Linear-Algebra: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.math.linear_algebra.exe | |
| set -o pipefail | |
| ./tests.math.linear_algebra.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Root-Finding: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.root_finding.exe | |
| set -o pipefail | |
| ./tests.root_finding.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Multi-Dimensional-Minimizer: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.multi_dimensional_minimizer.exe | |
| set -o pipefail | |
| ./tests.multi_dimensional_minimizer.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Search: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.search.exe | |
| set -o pipefail | |
| ./tests.search.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Roman-Numerals: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.Roman_numerals.exe | |
| set -o pipefail | |
| ./tests.Roman_numerals.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-SI-Prefixes: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.SI_prefixes.exe | |
| set -o pipefail | |
| ./tests.SI_prefixes.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Sort: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.sort.exe | |
| set -o pipefail | |
| ./tests.sort.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Sort-Topological: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.sort.topological.exe | |
| set -o pipefail | |
| ./tests.sort.topological.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-String-Utilities: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.string_utilities.exe | |
| set -o pipefail | |
| ./tests.string_utilities.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Vectors: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.vectors.exe | |
| set -o pipefail | |
| ./tests.vectors.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Multi-Counters: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.multi_counters.exe | |
| set -o pipefail | |
| ./tests.multi_counters.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Tensors: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.tensors.exe | |
| set -o pipefail | |
| ./tests.tensors.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Cosmic-Age: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.cosmic_age.exe | |
| set -o pipefail | |
| ./tests.cosmic_age.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Open: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.open.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.open.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Flat: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.flat.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.flat.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Dark-Energy-EdS: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.dark_energy.EdS.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.dark_energy.EdS.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Dark-Energy-Open: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.dark_energy.open.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.dark_energy.open.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Dark-Energy-Lambda: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.dark_energy.lambda.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.dark_energy.lambda.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminusHalf: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.dark_energy.constantEoSminusHalf.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.dark_energy.constantEoSminusHalf.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminusTwoThirds: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.dark_energy.constantEoSminusTwoThirds.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.dark_energy.constantEoSminusTwoThirds.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminus0-6: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.dark_energy.constantEoSminus0.6.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.dark_energy.constantEoSminus0.6.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminus0-8: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.dark_energy.constantEoSminus0.8.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.dark_energy.constantEoSminus0.8.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Baryons-Dark-Matter: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.baryons_dark_matter.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.baryons_dark_matter.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spherical-Collapse-Nonlinear: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spherical_collapse.nonlinear.exe | |
| set -o pipefail | |
| ./tests.spherical_collapse.nonlinear.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Warm-Dark-Matter: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.warm_dark_matter.exe | |
| set -o pipefail | |
| ./tests.warm_dark_matter.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Linear-Growth-Cosmological-Constant: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.linear_growth.cosmological_constant.exe | |
| set -o pipefail | |
| ./tests.linear_growth.cosmological_constant.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Linear-Growth-EdS: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.linear_growth.EdS.exe | |
| set -o pipefail | |
| ./tests.linear_growth.EdS.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Linear-Growth-Open: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.linear_growth.open.exe | |
| set -o pipefail | |
| ./tests.linear_growth.open.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Linear-Growth-Dark-Energy: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.linear_growth.dark_energy.exe | |
| set -o pipefail | |
| ./tests.linear_growth.dark_energy.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Linear-Growth-Baryons-EdS: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.linear_growth.baryons.EdS.exe | |
| set -o pipefail | |
| ./tests.linear_growth.baryons.EdS.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Halo-Mass-Function-Tinker: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.halo_mass_function.Tinker.exe | |
| set -o pipefail | |
| ./tests.halo_mass_function.Tinker.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Halo-Mass-Function-Reed2007: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.halo_mass_function.Reed2007.exe | |
| set -o pipefail | |
| ./tests.halo_mass_function.Reed2007.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Halo-Mass-Function-Environment-Averaged: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.halo_mass_function.environment_averaged.exe | |
| set -o pipefail | |
| ./tests.halo_mass_function.environment_averaged.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Comoving-Distance: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.comoving_distance.exe | |
| set -o pipefail | |
| ./tests.comoving_distance.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Mass-Accretion-History-Correa2015: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.mass_accretion_history.Correa2015.exe | |
| set -o pipefail | |
| ./tests.mass_accretion_history.Correa2015.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Zhao2009-Algorithms-Dark-Energy: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.Zhao2009_algorithms.dark_energy.exe | |
| set -o pipefail | |
| ./tests.Zhao2009_algorithms.dark_energy.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Zhao2009-Algorithms-EdS: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.Zhao2009_algorithms.EdS.exe | |
| set -o pipefail | |
| ./tests.Zhao2009_algorithms.EdS.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Zhao2009-Algorithms-Open: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.Zhao2009_algorithms.open.exe | |
| set -o pipefail | |
| ./tests.Zhao2009_algorithms.open.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-NFW96-Concentration-Dark-Energy: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.NFW96_concentration.dark_energy.exe | |
| set -o pipefail | |
| ./tests.NFW96_concentration.dark_energy.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Prada2011-Concentration: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.Prada2011_concentration.exe | |
| set -o pipefail | |
| ./tests.Prada2011_concentration.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-DiemerKravtsov2014-Concentration: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.DiemerKravtsov2014_concentration.exe | |
| set -o pipefail | |
| ./tests.DiemerKravtsov2014_concentration.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Concentration-Correa2015: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.concentration.Correa2015.exe | |
| set -o pipefail | |
| ./tests.concentration.Correa2015.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Concentrations: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.concentrations.exe | |
| set -o pipefail | |
| ./tests.concentrations.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Biases: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.biases.exe | |
| set -o pipefail | |
| ./tests.biases.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Kepler-Orbits: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.kepler_orbits.exe | |
| set -o pipefail | |
| ./tests.kepler_orbits.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Abundances: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.abundances.exe | |
| set -o pipefail | |
| ./tests.abundances.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Sigma: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.sigma.exe | |
| set -o pipefail | |
| ./tests.sigma.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Power-Spectrum-Primordial: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.power_spectrum.primordial.exe | |
| set -o pipefail | |
| ./tests.power_spectrum.primordial.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Power-Spectrum: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.power_spectrum.exe | |
| set -o pipefail | |
| ./tests.power_spectrum.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Transfer-Functions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.transfer_functions.exe | |
| set -o pipefail | |
| ./tests.transfer_functions.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Black-Hole-Fundamentals: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.black_hole_fundamentals.exe | |
| set -o pipefail | |
| ./tests.black_hole_fundamentals.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Bug745815: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.bug745815.exe | |
| set -o pipefail | |
| ./tests.bug745815.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Gaunt-Factors: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.gaunt_factors.exe | |
| set -o pipefail | |
| ./tests.gaunt_factors.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Cooling-Functions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.cooling_functions.exe | |
| set -o pipefail | |
| ./tests.cooling_functions.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Accretion-Disks: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.accretion_disks.exe | |
| set -o pipefail | |
| ./tests.accretion_disks.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Mass-Accretion-History-Hearin2021: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.mass_accretion_history.Hearin2021.exe | |
| set -o pipefail | |
| ./tests.mass_accretion_history.Hearin2021.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Mass-Accretion-History-Hearin2021-Stochastic: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.mass_accretion_history.Hearin2021_stochastic.exe | |
| set -o pipefail | |
| ./tests.mass_accretion_history.Hearin2021_stochastic.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles-Projected: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.projected.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.projected.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles-Adiabatic-Gnedin2004: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.adiabaticGnedin2004.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.adiabaticGnedin2004.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles-Heated: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.heated.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.heated.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Halo-Radius-Enclosing-Mass: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_halo_radius_enclosing_mass.exe | |
| set -o pipefail | |
| ./tests.dark_matter_halo_radius_enclosing_mass.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles-Tidal-Tracks: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.tidal_tracks.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.tidal_tracks.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles-Generic: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.generic.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.generic.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles-Finite_Resolution: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.finite_resolution.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.finite_resolution.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Dark-Matter-Profiles-Zhao1996: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.dark_matter_profiles.Zhao1996.exe | |
| set -o pipefail | |
| ./tests.dark_matter_profiles.Zhao1996.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Spectra-Postprocess-Inoue2014: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.spectra.postprocess.Inoue2014.exe | |
| set -o pipefail | |
| ./tests.spectra.postprocess.Inoue2014.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Recombination-Computed: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.recombination_computed.exe | |
| set -o pipefail | |
| ./tests.recombination_computed.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Recombination-Cooling-Hummer: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.recombination_cooling.Hummer.exe | |
| set -o pipefail | |
| ./tests.recombination_cooling.Hummer.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Locks: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.locks.exe | |
| set -o pipefail | |
| ./tests.locks.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Initial-Mass-Functions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.initial_mass_functions.exe | |
| set -o pipefail | |
| ./tests.initial_mass_functions.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Stellar-Populations: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.stellar_populations.exe | |
| set -o pipefail | |
| ./tests.stellar_populations.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Stellar-Populations-Luminosities: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.stellar_populations.luminosities.exe | |
| set -o pipefail | |
| ./tests.stellar_populations.luminosities.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Crash: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.crash.exe | |
| ! ./tests.crash.exe | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Fail: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.fail.exe | |
| set -o pipefail | |
| ./tests.fail.exe 2>&1 | tee test.log | |
| grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Excursion-Sets: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.excursion_sets.exe | |
| set -o pipefail | |
| ./tests.excursion_sets.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Merger-Tree-Branching: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.merger_tree_branching.exe | |
| set -o pipefail | |
| ./tests.merger_tree_branching.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Event-Hooks: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.event_hooks.exe | |
| set -o pipefail | |
| ./tests.event_hooks.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Tree-Branch_Destroy: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Install valgrind | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt -y install valgrind | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.tree_branch_destroy.exe | |
| set -o pipefail | |
| valgrind ./tests.tree_branch_destroy.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| grep -q "All heap blocks were freed -- no leaks are possible" test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Binary-Search-Trees: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Install valgrind | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt -y install valgrind | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.binary_search_trees.exe | |
| set -o pipefail | |
| ./tests.binary_search_trees.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Tests-Orbits: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.orbits.exe | |
| set -o pipefail | |
| ./tests.orbits.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### MPI Test Codes | |
| Test-MPI: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs-MPI | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.MPI.exe | |
| set -o pipefail | |
| mpirun -np 2 --allow-run-as-root ./tests.MPI.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-MPI-Radiative-Transfer-Atomic-Matter-State-Solver: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs-MPI | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.radiative_transfer.atomic_matter.state_solver.exe | |
| set -o pipefail | |
| mpirun -np 2 --allow-run-as-root ./tests.radiative_transfer.atomic_matter.state_solver.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Debugging Test Codes | |
| Test-Debugging: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-Debugging-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs-debugging | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.debugging.exe | |
| set -o pipefail | |
| ./tests.debugging.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Cosmology | |
| Test-Cosmology-01: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-cosmology.pl | |
| set -o pipefail | |
| ./test-cosmology.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 1:2 2>&1 | tee test.log | |
| grep -v -q "BEGIN failed" test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Cosmology-02: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-cosmology.pl | |
| set -o pipefail | |
| ./test-cosmology.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 2:2 2>&1 | tee test.log | |
| grep -v -q "BEGIN failed" test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Mass Conservation | |
| Test-Mass-Conservation-Simple: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-mass-conservation-simple.pl | |
| set -o pipefail | |
| ./test-mass-conservation-simple.pl --launchMethod local --threadMaximum 1 --ompThreads 2 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Mass-Conservation-Standard: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-mass-conservation-standard.pl | |
| set -o pipefail | |
| ./test-mass-conservation-standard.pl --launchMethod local --threadMaximum 1 --ompThreads 2 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Mass-Conservation-Cold-Mode: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-mass-conservation-coldMode.pl | |
| set -o pipefail | |
| ./test-mass-conservation-coldMode.pl --launchMethod local --threadMaximum 1 --ompThreads 2 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Merger Trees | |
| Test-Merger-Tree-Builder-01: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-merger-tree-builder.pl | |
| set -o pipefail | |
| ./test-merger-tree-builder.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 1:4 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Merger-Tree-Builder-02: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-merger-tree-builder.pl | |
| set -o pipefail | |
| ./test-merger-tree-builder.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 2:4 2>&1 | tee test.log | |
| grep -v -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Merger-Tree-Builder-03: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-merger-tree-builder.pl | |
| set -o pipefail | |
| ./test-merger-tree-builder.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 3:4 2>&1 | tee test.log | |
| grep -v -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Merger-Tree-Builder-Parallel: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-parallelTreeBuild.pl | |
| set -o pipefail | |
| ./test-parallelTreeBuild.pl 2>&1 | tee test.log | |
| grep -v -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Merger-Tree-Builder-04: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-merger-tree-builder.pl | |
| set -o pipefail | |
| ./test-merger-tree-builder.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 4:4 2>&1 | tee test.log | |
| grep -v -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Merger-Tree-Write: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-merger-tree-write.pl | |
| set -o pipefail | |
| ./test-merger-tree-write.pl --launchMethod local --threadMaximum 1 --ompThreads 2 2>&1 | tee test.log | |
| grep -v -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ## Model Integration | |
| Test-Model-Integration-01: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-model-integration.pl | |
| set -o pipefail | |
| ./test-model-integration.pl --instance 1:2 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Model-Integration-02: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-model-integration.pl | |
| set -o pipefail | |
| ./test-model-integration.pl --instance 2:2 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ## Misc Models | |
| Test-Allowed-Parameters: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-allowed-parameters.pl | |
| set -o pipefail | |
| ./test-allowed-parameters.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Bar-Instability: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-bar-instability.pl | |
| set -o pipefail | |
| ./test-bar-instability.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Transfer-Function-Axions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-transfer-functions-axion.pl | |
| set -o pipefail | |
| ./test-transfer-functions-axion.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Mass-Definitions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-mass-definitions.pl | |
| set -o pipefail | |
| ./test-mass-definitions.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Bolshoi-Tree-Builder: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-Bolshoi-tree-builder.pl | |
| set -o pipefail | |
| ./test-Bolshoi-tree-builder.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Branchless-Trees: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-branchlessTrees.pl | |
| set -o pipefail | |
| ./test-branchlessTrees.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Branch-Subsampling: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-branchSubsampling.pl | |
| set -o pipefail | |
| ./test-branchSubsampling.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-CGM-Mass-Cooled: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-CGM-mass-cooled.pl | |
| set -o pipefail | |
| ./test-CGM-mass-cooled.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Concentration-Ludlow2016: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-concentration-Ludlow2016.pl | |
| set -o pipefail | |
| ./test-concentration-Ludlow2016.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Dark-Matter-Profiles-Projected: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-tidallyTruncatedNFWFit.pl | |
| set -o pipefail | |
| ./test-tidallyTruncatedNFWFit.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Constraint-Deterministic-Spins: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-constraint-deterministic-spins.pl | |
| set -o pipefail | |
| ./test-constraint-deterministic-spins.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Constraint-Mass-Function: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-constraint-mass-function.pl | |
| set -o pipefail | |
| ./test-constraint-mass-function.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Extract-Directives: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH/testSuite | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./test-extract-directives.pl | |
| set -o pipefail | |
| ./test-extract-directives.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Fortran-Utils: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH/testSuite | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./test-fortran-utils.pl | |
| set -o pipefail | |
| ./test-fortran-utils.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Halo-Mass-Functions: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-halo-mass-functions.pl | |
| set -o pipefail | |
| ./test-halo-mass-functions.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Inactive-Luminosities: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-inactive_luminosities.pl | |
| set -o pipefail | |
| ./test-inactive_luminosities.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Interoutput-Star-Formation-Rate: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-interoutput-star-formation-rate.pl | |
| set -o pipefail | |
| ./test-interoutput-star-formation-rate.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Mass-Host-Maximum: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-mass-host-maximum.pl | |
| set -o pipefail | |
| ./test-mass-host-maximum.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Satellite-Distance-Minimum: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-satellite-distance-minimum.pl | |
| set -o pipefail | |
| ./test-satellite-distance-minimum.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Tree-Filter-Labels: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-treeFilterLabels.pl | |
| set -o pipefail | |
| ./test-treeFilterLabels.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Constrained-Merger-Trees: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: constrained-merger-trees-${{ github.run_id }} | |
| restore-keys: | | |
| constrained-merger-trees | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-constrained-merger-trees.pl | |
| set -o pipefail | |
| ./test-constrained-merger-trees.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Millennium-Tree-Builder: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-Millennium-tree-builder.pl | |
| set -o pipefail | |
| ./test-Millennium-tree-builder.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Output: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-output.pl | |
| set -o pipefail | |
| ./test-output.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Output-Tree-Contiguousity: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-output-tree-contiguousity.pl | |
| set -o pipefail | |
| ./test-output-tree-contiguousity.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Parameter-Validation: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH/testSuite | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./test-parameter-validation.pl | |
| set -o pipefail | |
| ./test-parameter-validation.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Parameter-Migration: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH/testSuite | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./test-parameter-migration.pl | |
| set -o pipefail | |
| ./test-parameter-migration.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Perl-Modules: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH/testSuite | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./test-perl-modules.pl | |
| set -o pipefail | |
| ./test-perl-modules.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Reproducibility: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-reproducibility.pl | |
| set -o pipefail | |
| ./test-reproducibility.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Split-Forests: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-splitForests.pl | |
| set -o pipefail | |
| ./test-splitForests.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Star-Formation-Histories-Adaptive: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-star-formation-histories-adaptive.pl | |
| set -o pipefail | |
| ./test-star-formation-histories-adaptive.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-State-Restore: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-stateRestore.pl | |
| set -o pipefail | |
| ./test-stateRestore.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Checkpointing: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-checkpointing.pl | |
| set -o pipefail | |
| ./test-checkpointing.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Stellar-Mass-Weighted-Ages: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-stellar-mass-weighted-ages.pl | |
| set -o pipefail | |
| ./test-stellar-mass-weighted-ages.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Tidal-Tracks: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-tidalTracks.pl | |
| set -o pipefail | |
| ./test-tidalTracks.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-galacticStructureState-Deallocate-Bug: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-galacticStructureStateDeallocateBug.pl | |
| set -o pipefail | |
| ./test-galacticStructureStateDeallocateBug.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Inactive-Numerics: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-inactiveNumerics.pl | |
| set -o pipefail | |
| ./test-inactiveNumerics.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Impulsive-Heating: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-impulsiveHeating.pl | |
| set -o pipefail | |
| ./test-impulsiveHeating.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Halo-Triaxiality: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-haloTriaxiality.pl | |
| set -o pipefail | |
| ./test-haloTriaxiality.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Parallelization | |
| Test-Threaded-Evolution: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/parameters/mergerTreeEvolverThreaded.xml 2>&1 | tee test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Outputs | |
| Test-Outputs-01: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 1:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-02: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 2:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-03: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 3:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-04: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 4:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-05: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 5:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-06: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 6:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-07: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 7:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-08: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 8:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-09: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 9:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Outputs-10: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-outputs.pl | |
| set -o pipefail | |
| ./test-outputs.pl --launchMethod local --threadMaximum 1 --ompThreads 2 --instance 10:10 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Regressions | |
| Regressions-Bug-1053153: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/bug1053153.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Bug-1066052: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| chmod u=wrx ./testSuite/regressions/bug1066052.pl | |
| set -o pipefail | |
| ./testSuite/regressions/bug1066052.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Bug-711424: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/bug711424.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Bug-725315: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/bug725315.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Coincident-Merger-And-Branch-Jump: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/coincidentMergerAndBranchJump.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Cole2000-Tree-Builder-WDM-Node-Well-Ordering: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: regressions-Cole2000-${{ github.run_id }} | |
| restore-keys: | | |
| regressions-Cole2000 | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/cole2000TreeBuilderWDMNodeWellOrdering.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Deadlock-Merge-Target-In-Descendent-Of-Mergee-2: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/deadlockMergeTargetInDescendentOfMergee2.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Deadlock-Merge-Target-In-Descendent-Of-Mergee: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/deadlockMergeTargetInDescendentOfMergee.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Final-Time-Before-Output-Time: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/finalTimeBeforeOutputTime.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Immediate-Sub-Sub-Merger-Then-Branch-Jump: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/immediateSubSubMergerThenBranchJump.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Initial-Satellite-No-Primary-Progenitor: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/initialSatelliteNoPrimaryProgenitor.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Issue-142: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: Cache dynamically-generated datasets | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/datasets/dynamic | |
| key: regressions-issue142-${{ github.run_id }} | |
| restore-keys: | | |
| regressions-issue142 | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Mark time for cache accesses | |
| run: | | |
| echo mark > mark.time | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/issue142.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - name: "Clean datasets" | |
| run: | | |
| echo Removing outdated dynamically-generated datasets | |
| echo Retaining: | |
| classVersion=`awk '{if ($1 == "class:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cambVersion=`awk '{if ($1 == "camb:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| forutilsVersion=`awk '{if ($1 == "forutils:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| fspsVersion=`awk '{if ($1 == "fsps:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| cloudyVersion=`awk '{if ($1 == "cloudy:") print $2}' ${GALACTICUS_EXEC_PATH}/aux/dependencies.yml` | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -anewer mark.time -print | |
| find $GALACTICUS_DATA_PATH/dynamic/ -type d \( -path $GALACTICUS_DATA_PATH/dynamic/fsps-${fspsVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/AxionCAMB -o -path $GALACTICUS_DATA_PATH/dynamic/CAMB-${cambVersion} -o -path $GALACTICUS_DATA_PATH/dynamic/RecFast -o -path $GALACTICUS_DATA_PATH/dynamic/class_public-${classVersion} \) -prune -o -type f -not -anewer mark.time -print0 | xargs --no-run-if-empty -0 rm | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Linear-Growth-For-Future-Model: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/linearGrowthForFutureModel.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Ludlow-Scale-Set-Before-Tree-Initialization: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/ludlowScaleSetBeforeTreeInitialization.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Merger-At-Final-Time-In-Tree: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/mergerAtFinalTimeInTree.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Merger-Tree-Box-Size-Weight: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| chmod u=wrx ./testSuite/regressions/mergerTreeBoxSizeWeight.pl | |
| set -o pipefail | |
| ./testSuite/regressions/mergerTreeBoxSizeWeight.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Particulate: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/particulate.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Satellite-Preset-Bound-Mass-Non-Zero: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| chmod u=wrx ./testSuite/regressions/satellitePresetBoundMassNonZero.pl | |
| set -o pipefail | |
| ./testSuite/regressions/satellitePresetBoundMassNonZero.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Set-Properties: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository analysis-perl | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/analysis-perl | |
| path: analysis-perl | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| echo "GALACTICUS_ANALYSIS_PERL_PATH=$GITHUB_WORKSPACE/analysis-perl" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| chmod u=wrx ./testSuite/regressions/setProperties.pl | |
| set -o pipefail | |
| ./testSuite/regressions/setProperties.pl 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Subhalo-Merges-At-Final-Time-Of-Tree: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/subhaloMergesAtFinalTimeOfTree.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Subhalo-Two-Consecutive-Mergers: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/subhaloTwoConsecutiveMergers.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Tree-With-Initial-Satellite-In-Progenitorless-Host: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/treeWithInitialSatelliteInProgenitorlessHost.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Tree-With-No-Primary-Progenitor: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/treeWithNoPrimaryProgenitor.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Regressions-Bar-Instability-FPE: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| mkdir -p testSuite/outputs/regressions | |
| set -o pipefail | |
| ./Galacticus.exe testSuite/regressions/barInstabilityFPE.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Methods | |
| Test-Methods-01: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 1:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-02: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 2:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-03: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 3:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-04: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 4:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-05: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 5:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-06: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 6:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-07: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 7:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-08: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 8:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-09: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 9:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-10: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 10:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-11: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 11:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-12: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 12:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-13: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 13:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-14: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 14:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-15: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 15:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-16: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 16:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-17: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 17:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-18: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 18:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-19: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 19:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-Methods-20: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods.pl | |
| set -o pipefail | |
| ./test-methods.pl --launchMethod local --verbosity 1 --threadMaximum 1 --ompThreads 2 --instance 20:20 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### MPI Misc Models | |
| Test-MPI-State-Restore: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-MPI | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-stateRestore_MPI.pl | |
| set -o pipefail | |
| ./test-stateRestore_MPI.pl --processesPerNode 8 --allow-run-as-root yes 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-MPI-Radiative-Transfer-Stromgren-Sphere: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-MPI | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-radiativeTransfer-StromgrenSphere_MPI.pl | |
| set -o pipefail | |
| ./test-radiativeTransfer-StromgrenSphere_MPI.pl --processesPerNode 2 --allow-run-as-root yes 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-MPI-MCMC: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-MPI | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| export OMP_NUM_THREADS=1 | |
| set -o pipefail | |
| mpirun --allow-run-as-root -np 4 ./Galacticus.exe parameters/tutorials/mcmcConfig.xml 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### MPI Methods | |
| Test-MPI-Methods-01: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-MPI | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods_MPI.pl | |
| set -o pipefail | |
| ./test-methods_MPI.pl --launchMethod local --threadMaximum 1 --ompThreads 1 --instance 1:2 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| Test-MPI-Methods-02: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-MPI | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-methods_MPI.pl | |
| set -o pipefail | |
| ./test-methods_MPI.pl --launchMethod local --threadMaximum 1 --ompThreads 1 --instance 2:2 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Memory leaks (non-MPI) | |
| Test-Memory-Leaks: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executable-Linux-Non-Static | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-non-static | |
| - name: Install valgrind | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt -y install valgrind | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-memory-leaks.pl | |
| set -o pipefail | |
| ./test-memory-leaks.pl --mpi 0 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Memory leaks (MPI) | |
| Test-Memory-Leaks-MPI: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Executables-MPI-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The $githubrepository repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-MPI | |
| - name: Install valgrind | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt -y install valgrind | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./Galacticus.exe | |
| cd testSuite | |
| chmod u=wrx ./test-memory-leaks.pl | |
| set -o pipefail | |
| ./test-memory-leaks.pl --mpi 1 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ## Python Interface | |
| Test-Python-Interface: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/galacticusorg/buildenv:latest | |
| needs: Build-Library-Linux | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$GITHUB_WORKSPACE/galacticus/python" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max-old-space-size=5120" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Install Python2 | |
| run: | | |
| apt -y update && apt -y upgrade | |
| apt -y install python2.7 | |
| - name: Download library | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-library | |
| - name: Test interface | |
| run: | | |
| tar xvfj libgalacticus.tar.bz2 | |
| python2.7 testSuite/test-Python-interface.py | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ## MacOS | |
| ### Test Codes | |
| Tests-Hashes-Cryptographic-MacOS: | |
| runs-on: macos-11 | |
| needs: Build-Executable-MacOS | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Check out repository datasets | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: galacticusorg/datasets | |
| path: datasets | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "GALACTICUS_DATA_PATH=$GITHUB_WORKSPACE/datasets" >> $GITHUB_ENV | |
| - name: Download executables | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: test-execs-MacOS | |
| - name: Create test suite output directory | |
| run: mkdir -p $GALACTICUS_EXEC_PATH/testSuite/outputs | |
| - name: Run test | |
| run: | | |
| cd $GALACTICUS_EXEC_PATH | |
| git config --global --add safe.directory $GALACTICUS_EXEC_PATH | |
| chmod u=wrx ./tests.hashes.cryptographic.exe | |
| set -o pipefail | |
| ./tests.hashes.cryptographic.exe 2>&1 | tee test.log | |
| ! grep -q FAIL test.log | |
| - run: echo "This job's status is ${{ job.status }}." | |
| ### Test Python Interface | |
| Test-Python-Interface-MacOS: | |
| runs-on: macos-11 | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server." | |
| - run: echo "The name of the branch is ${{ github.ref }} and the repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - run: echo "The ${{ github.repository }} repository has been cloned to the runner." | |
| - name: "Set environmental variables" | |
| run: | | |
| echo "GALACTICUS_EXEC_PATH=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| echo "PYTHONPATH=$GITHUB_WORKSPACE/galacticus/python" >> $GITHUB_ENV | |
| echo "GALACTICUS_FCFLAGS=\"$GALACTICUS_FCFLAGS -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib\"" >> $GITHUB_ENV | |
| echo "FCCOMPILER=gfortran-11" >> $GITHUB_ENV | |
| echo "CCOMPILER=gcc-11" >> $GITHUB_ENV | |
| echo "CPPCOMPILER=g++-11" >> $GITHUB_ENV | |
| echo "PATH=$PATH:/opt/local/bin:/usr/local/bin" >> $GITHUB_ENV | |
| echo "PERL_MM_USE_DEFAULT=1" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max-old-space-size=5120" >> $GITHUB_ENV | |
| echo "NODE_OPTIONS=--max_old_space_size=4096" >> $GITHUB_ENV | |
| - name: Install MacPorts | |
| run: | | |
| curl -L https://github.com/macports/macports-base/releases/download/v2.7.1/MacPorts-2.7.1-11-BigSur.pkg --output MacPorts-2.7.1-11-BigSur.pkg | |
| sudo installer -pkg ./MacPorts-2.7.1-11-BigSur.pkg -target / | |
| rm ./MacPorts-2.7.1-11-BigSur.pkg | |
| - name: Install guile | |
| run: sudo port install guile18 | |
| - name: Install libmatheval | |
| run: | | |
| curl -L https://github.com/galacticusorg/libmatheval/releases/download/latest/libmatheval-1.1.12.tar.gz --output libmatheval-1.1.12.tar.gz | |
| tar xvfz libmatheval-1.1.12.tar.gz | |
| cd libmatheval-1.1.12 | |
| # Patch following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| sed -E -i~ s/"#undef HAVE_SCM_T_BITS"/"#define HAVE_SCM_T_BITS 1"/ config.h.in | |
| sed -E -i~ s/"-lguile"/"-lguile18"/ configure | |
| sed -E -i~ s/"libguile.h"/"libguile18.h"/g configure tests/matheval.c | |
| # Set guile paths following the approach used in MacPorts (https://github.com/macports/macports-ports/tree/master/math/libmatheval). | |
| CC=gcc-11 GUILE=/opt/local/bin/guile18 GUILE_CONFIG=/opt/local/bin/guile18-config GUILE_TOOLS=/opt/local/bin/guile18-tools ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf libmatheval-1.1.12.tar.gz libmatheval-1.1.12 | |
| - name: Install qhull | |
| run: | | |
| curl -L http://www.qhull.org/download/qhull-2020-src-8.0.2.tgz --output qhull-2020-src-8.0.2.tgz | |
| tar xvfz qhull-2020-src-8.0.2.tgz | |
| cd qhull-2020.2 | |
| make -j3 CC=gcc-11 CXX=g++-11 | |
| sudo make install | |
| cd .. | |
| rm -rf qhull-2020-src-8.0.2.tgz qhull-2020.2 | |
| - name: Install GSL | |
| run: | | |
| curl -L ftp://ftp.gnu.org/gnu/gsl/gsl-2.6.tar.gz --output gsl-2.6.tar.gz | |
| tar xvfz gsl-2.6.tar.gz | |
| cd gsl-2.6 | |
| CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf gsl-2.6 gsl-2.6.tar.gz | |
| - name: Install HDF5 | |
| run: | | |
| curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8/hdf5-1.8.20/src/hdf5-1.8.20.tar.gz --output hdf5-1.8.20.tar.gz | |
| tar -vxzf hdf5-1.8.20.tar.gz | |
| cd hdf5-1.8.20 | |
| CC=gcc-11 CXX=g++-11 FC=gfortran-11 ./configure --prefix=/usr/local --enable-fortran --enable-production | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf hdf5-1.8.20 hdf5-1.8.20.tar.gz | |
| - name: Install FoX | |
| run: | | |
| curl -L https://github.com/andreww/fox/archive/refs/tags/4.1.0.tar.gz --output FoX-4.1.0.tar.gz | |
| tar xvfz FoX-4.1.0.tar.gz | |
| cd fox-4.1.0 | |
| FC=gfortran-11 ./configure --prefix=/usr/local | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| rm -rf fox-4.1.0 FoX-4.1.0.tar.gz | |
| - name: Install FFTW3 | |
| run: | | |
| curl -L ftp://ftp.fftw.org/pub/fftw/fftw-3.3.4.tar.gz --output fftw-3.3.4.tar.gz | |
| tar xvfz fftw-3.3.4.tar.gz | |
| cd fftw-3.3.4 | |
| F77=gfortran-11 CC=gcc-11 ./configure --prefix=/usr/local | |
| make -j4 | |
| sudo make install | |
| cd .. | |
| rm -rf fftw-3.3.4 fftw-3.3.4.tar.gz | |
| - name: Install ANN | |
| run: | | |
| curl -L http://www.cs.umd.edu/~mount/ANN/Files/1.1.2/ann_1.1.2.tar.gz --output ann_1.1.2.tar.gz | |
| tar xvfz ann_1.1.2.tar.gz | |
| cd ann_1.1.2 | |
| sed -E -i~ s/"C\+\+ = g\+\+"/"C\+\+ = g\+\+\-11"/ Make-config | |
| make macosx-g++ | |
| cp bin/* /usr/local/bin/. | |
| cp lib/* /usr/local/lib/. | |
| cp -R include/* /usr/local/include/. | |
| - name: Install IO::Socket::SSL | |
| run: | | |
| curl -L https://cpan.metacpan.org/authors/id/C/CH/CHRISN/Net-SSLeay-1.90.tar.gz --output Net-SSLeay-1.90.tar.gz | |
| tar xvfz Net-SSLeay-1.90.tar.gz | |
| cd Net-SSLeay-1.90 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/S/SU/SULLR/IO-Socket-SSL-1.966.tar.gz --output IO-Socket-SSL-1.966.tar.gz | |
| tar xvfz IO-Socket-SSL-1.966.tar.gz | |
| cd IO-Socket-SSL-1.966 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| cd .. | |
| cd .. | |
| curl -L https://cpan.metacpan.org/authors/id/M/MK/MKODERER/Sys-CPU-0.52.tar.gz --output Sys-CPU-0.52.tar.gz | |
| tar xvfz Sys-CPU-0.52.tar.gz | |
| cd Sys-CPU-0.52 | |
| perl Makefile.PL | |
| make -j3 | |
| sudo make install | |
| - name: Install CPAN | |
| run: | | |
| sudo perl -MCPAN -e shell | |
| sudo perl -MCPAN -e 'install Bundle::CPAN' | |
| - name: Install Perl modules | |
| run: | | |
| export CFLAGS=-I/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/System/Library/Perl/5.18/darwin-thread-multi-2level/CORE | |
| sudo perl -MCPAN -e 'force("install","NestedMap")' | |
| sudo perl -MCPAN -e 'force("install","Scalar::Util")' | |
| sudo perl -MCPAN -e 'force("install","Term::ANSIColor")' | |
| sudo perl -MCPAN -e 'force("install","Text::Table")' | |
| sudo perl -MCPAN -e 'force("install","ExtUtils::ParseXS")' | |
| sudo perl -MCPAN -e 'install Path::Tiny' | |
| sudo perl -MCPAN -e 'install PkgConfig' | |
| sudo perl -MCPAN -e 'install Alien::Base::Wrapper' | |
| sudo perl -MCPAN -e 'force("install","Alien::Libxml2")' | |
| sudo perl -MCPAN -e 'install XML::LibXML::SAX' | |
| sudo perl -MCPAN -e 'force("install","XML::SAX::ParserFactory")' | |
| sudo perl -MCPAN -e 'force("install","XML::Validator::Schema")' | |
| sudo perl -MCPAN -e 'force("install","Text::Template")' | |
| sudo perl -MCPAN -e 'force("install","List::Uniq")' | |
| sudo perl -MCPAN -e 'force("install","IO::Util")' | |
| sudo perl -MCPAN -e 'force("install","Class::Util")' | |
| sudo perl -MCPAN -e 'force("install","CGI::Builder")' | |
| sudo perl -MCPAN -e 'force("install","Simple")' | |
| sudo perl -MCPAN -e 'force("install","Readonly")' | |
| sudo perl -MCPAN -e 'force("install","File::Slurp")' | |
| sudo perl -MCPAN -e 'force("install","XML::Simple")' | |
| sudo perl -MCPAN -e 'force("install","List::MoreUtils")' | |
| sudo perl -MCPAN -e 'force("install","Clone")' | |
| sudo perl -MCPAN -e 'force("install","IO::Scalar")' | |
| sudo perl -MCPAN -e 'force("install","Regexp::Common")' | |
| sudo perl -MCPAN -e 'install LaTeX::Encode' | |
| sudo perl -MCPAN -e 'install Sub::Identify' | |
| - name: Build Galacticus | |
| run: | | |
| export GALACTICUS_EXEC_PATH=`pwd` | |
| export FCCOMPILER=gfortran-11 | |
| export CCOMPILER=gcc-11 | |
| export CPPCOMPILER=g++-11 | |
| export GALACTICUS_FCFLAGS="-fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/lib/gfortran/modules -L/usr/local/lib -L/opt/local/lib" | |
| export GALACTICUS_CFLAGS="-I/usr/local/include -I/opt/local/include" | |
| export GALACTICUS_CPPFLAGS="-I/usr/local/include -I/opt/local/include -I/usr/local/include/libqhullcpp" | |
| make -j3 GALACTICUS_BUILD_OPTION=lib libgalacticus.so | |
| mkdir galacticus | |
| mkdir galacticus/lib | |
| mkdir galacticus/python | |
| mv galacticus.py galacticus/python/ | |
| mv libgalacticus.so galacticus/lib/ | |
| - name: Test interface | |
| run: | | |
| python2 testSuite/test-Python-interface.py | |
| - run: echo "This job's status is ${{ job.status }}." | |
| # Validate, deploy and update | |
| Validate: | |
| runs-on: ubuntu-latest | |
| needs: [ Benchmark-Dark-Matter-Only-Subhalos, Benchmark-Milky-Way-Model, Validate-Dark-Matter-Only-Subhalos, Validate-Milky-Way-Model ] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Download artifacts (executable-linux) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Download artifacts (benchmark-darkMatterOnlySubhalos) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: benchmark-darkMatterOnlySubhalos | |
| - name: Download artifacts (benchmark-milkyWay) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: benchmark-milkyWay | |
| - name: Download artifacts (validation-darkMatterOnlySubhalos) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: validation-darkMatterOnlySubhalos | |
| - name: Download artifacts (validation-milkyWay) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: validation-milkyWayModel | |
| - name: Download artifacts (build-profile) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: build-profile | |
| - name: Store benchmark result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Dark matter-only subhalos benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: benchmark_darkMatterOnlySubhalos.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/darkMatterOnlySubhalos | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 150% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Store benchmark result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Milky Way model benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: benchmark_milkyWay.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/milkyWayModel | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 150% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Store validation result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Dark matter-only subhalos benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: validate_darkMatterOnlySubhalos.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/darkMatterOnlySubhalos | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 110% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Store validation result | |
| uses: benchmark-action/github-action-benchmark@v1 | |
| with: | |
| name: Milky Way model benchmarks | |
| tool: 'customSmallerIsBetter' | |
| output-file-path: validate_milkyWayModel.json | |
| summary-always: false | |
| comment-on-alert: true | |
| alert-comment-cc-users: '@abensonca' | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| auto-push: false | |
| benchmark-data-dir-path: dev/bench/milkyWayModel | |
| gh-pages-branch: gh-pages | |
| alert-threshold: 110% | |
| max-items-in-chart: 256 | |
| - name: Push benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Revert benchmark result | |
| run: | | |
| git checkout gh-pages | |
| git reset --hard HEAD~1 | |
| git checkout - | |
| if: github.event_name == 'pull_request' | |
| - name: Push validation result | |
| run: | | |
| git checkout gh-pages | |
| mv results_darkMatterOnlySubhalos.json dev/valid/darkMatterOnlySubhalos/results.json | |
| mv results_milkyWayModel.json dev/valid/milkyWayModel/results.json | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "github-action-validate" | |
| git add dev/valid/darkMatterOnlySubhalos/results.json dev/valid/milkyWayModel/results.json | |
| git commit -m "Update validation results" | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| - name: Push build profile | |
| run: | | |
| git checkout gh-pages | |
| mkdir -p dev/bench/meta | |
| mv buildProfile.html dev/bench/meta/buildProfile.html | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "github-action-validate" | |
| git add dev/bench/meta/buildProfile.html | |
| git commit -m "Update build profile" | |
| git push --set-upstream origin gh-pages | |
| git checkout - | |
| if: github.event_name != 'pull_request' | |
| Deploy: | |
| runs-on: ubuntu-latest | |
| if: github.ref == 'refs/heads/master' | |
| needs: [ Build-Executable-Linux, | |
| Build-Executables-Instrumented-Linux, | |
| Build-Executables-MPI-Linux, | |
| Build-Library-Linux, | |
| Build-Docker-Linux, | |
| Build-Documentation-Linux, | |
| Build-Tools, | |
| Build-Executable-MacOS, | |
| Build-Library-MacOS, | |
| Build-Tools-MacOS, | |
| Profile-Dark-Matter-Only-Subhalos, | |
| Profile-Milky-Way-Model, | |
| Profile-Milky-Way-SIDM-Model, | |
| Profile-Dark-Matter-Only-Subhalos-GProf, | |
| Profile-Milky-Way-GProf, | |
| Profile-Milky-Way-SIDM-GProf, | |
| Test-Nodes, | |
| Test-Parameters, | |
| Tests-Files, | |
| Tests-IO-HDF5, | |
| Tests-IO-XML, | |
| Tests-ODE-Solver, | |
| Tests-Random, | |
| Tests-Random-Quasi, | |
| Tests-Arrays, | |
| Tests-Meshes, | |
| Tests-Convex-Hulls, | |
| Tests-Comparisons, | |
| Tests-Geometry-Coordinate-Systems, | |
| Tests-Hashes, | |
| Tests-Hashes-Perfect, | |
| Tests-Regular-Expressions, | |
| Tests-Hashes-Cryptographic, | |
| Tests-Integration, | |
| Tests-Integration2, | |
| Tests-Differentiation, | |
| Tests-Tables, | |
| Tests-Interpolation, | |
| Tests-Interpolation-2D, | |
| Tests-Make-Ranges, | |
| Tests-Mass-Distributions, | |
| Tests-Math-Special-Functions, | |
| Tests-Math-Distributions, | |
| Tests-Math-Fast, | |
| Tests-Math-Arithmetic, | |
| Tests-Math-Linear-Algebra, | |
| Tests-Root-Finding, | |
| Tests-Multi-Dimensional-Minimizer, | |
| Tests-Search, | |
| Tests-Roman-Numerals, | |
| Tests-SI-Prefixes, | |
| Tests-Sort, | |
| Tests-Sort-Topological, | |
| Tests-String-Utilities, | |
| Tests-Vectors, | |
| Tests-Multi-Counters, | |
| Tests-Tensors, | |
| Tests-Cosmic-Age, | |
| Tests-Spherical-Collapse-Open, | |
| Tests-Spherical-Collapse-Flat, | |
| Tests-Spherical-Collapse-Dark-Energy-EdS, | |
| Tests-Spherical-Collapse-Dark-Energy-Open, | |
| Tests-Spherical-Collapse-Dark-Energy-Lambda, | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminusHalf, | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminusTwoThirds, | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminus0-6, | |
| Tests-Spherical-Collapse-Dark-Energy-ConstantEoSminus0-8, | |
| Tests-Spherical-Collapse-Baryons-Dark-Matter, | |
| Tests-Spherical-Collapse-Nonlinear, | |
| Tests-Warm-Dark-Matter, | |
| Tests-Linear-Growth-Cosmological-Constant, | |
| Tests-Linear-Growth-EdS, | |
| Tests-Linear-Growth-Open, | |
| Tests-Linear-Growth-Dark-Energy, | |
| Tests-Linear-Growth-Baryons-EdS, | |
| Tests-Halo-Mass-Function-Tinker, | |
| Tests-Halo-Mass-Function-Reed2007, | |
| Tests-Halo-Mass-Function-Environment-Averaged, | |
| Tests-Comoving-Distance, | |
| Tests-Mass-Accretion-History-Correa2015, | |
| Tests-Zhao2009-Algorithms-Dark-Energy, | |
| Tests-Zhao2009-Algorithms-EdS, | |
| Tests-Zhao2009-Algorithms-Open, | |
| Tests-NFW96-Concentration-Dark-Energy, | |
| Tests-Prada2011-Concentration, | |
| Tests-DiemerKravtsov2014-Concentration, | |
| Tests-Concentration-Correa2015, | |
| Tests-Concentrations, | |
| Tests-Biases, | |
| Tests-Kepler-Orbits, | |
| Tests-Abundances, | |
| Tests-Sigma, | |
| Tests-Power-Spectrum-Primordial, | |
| Tests-Power-Spectrum, | |
| Tests-Transfer-Functions, | |
| Tests-Black-Hole-Fundamentals, | |
| Tests-Bug745815, | |
| Tests-Gaunt-Factors, | |
| Tests-Cooling-Functions, | |
| Tests-Accretion-Disks, | |
| Tests-Mass-Accretion-History-Hearin2021, | |
| Tests-Mass-Accretion-History-Hearin2021-Stochastic, | |
| Tests-Dark-Matter-Profiles, | |
| Tests-Dark-Matter-Profiles-Projected, | |
| Tests-Dark-Matter-Profiles-Adiabatic-Gnedin2004, | |
| Tests-Dark-Matter-Profiles-Heated, | |
| Tests-Dark-Matter-Halo-Radius-Enclosing-Mass, | |
| Tests-Dark-Matter-Profiles-Tidal-Tracks, | |
| Tests-Dark-Matter-Profiles-Generic, | |
| Tests-Dark-Matter-Profiles-Finite_Resolution, | |
| Tests-Dark-Matter-Profiles-Zhao1996, | |
| Tests-Spectra-Postprocess-Inoue2014, | |
| Tests-Recombination-Computed, | |
| Tests-Recombination-Cooling-Hummer, | |
| Tests-Locks, | |
| Tests-Initial-Mass-Functions, | |
| Tests-Stellar-Populations, | |
| Tests-Stellar-Populations-Luminosities, | |
| Tests-Crash, | |
| Tests-Fail, | |
| Tests-Excursion-Sets, | |
| Tests-Merger-Tree-Branching, | |
| Tests-Event-Hooks, | |
| Tests-Tree-Branch_Destroy, | |
| Tests-Binary-Search-Trees, | |
| Tests-Orbits, | |
| Test-MPI, | |
| Test-Memory-Leaks, | |
| Test-Memory-Leaks-MPI, | |
| Test-MPI-Radiative-Transfer-Atomic-Matter-State-Solver, | |
| Test-Cosmology-01, | |
| Test-Cosmology-02, | |
| Test-Mass-Conservation-Simple, | |
| Test-Mass-Conservation-Standard, | |
| Test-Mass-Conservation-Cold-Mode, | |
| Test-Merger-Tree-Builder-01, | |
| Test-Merger-Tree-Builder-02, | |
| Test-Merger-Tree-Builder-03, | |
| Test-Merger-Tree-Builder-04, | |
| Test-Merger-Tree-Builder-Parallel, | |
| Test-Merger-Tree-Write, | |
| Test-Model-Integration-01, | |
| Test-Model-Integration-02, | |
| Test-Allowed-Parameters, | |
| Test-Bar-Instability, | |
| Test-Transfer-Function-Axions, | |
| Test-Mass-Definitions, | |
| Test-Bolshoi-Tree-Builder, | |
| Test-Branchless-Trees, | |
| Test-Branch-Subsampling, | |
| Test-CGM-Mass-Cooled, | |
| Test-Concentration-Ludlow2016, | |
| Test-Dark-Matter-Profiles-Projected, | |
| Test-Constraint-Deterministic-Spins, | |
| Test-Constraint-Mass-Function, | |
| Test-Extract-Directives, | |
| Test-Fortran-Utils, | |
| Test-Halo-Mass-Functions, | |
| Test-Inactive-Luminosities, | |
| Test-Interoutput-Star-Formation-Rate, | |
| Test-Mass-Host-Maximum, | |
| Test-Satellite-Distance-Minimum, | |
| Test-Tree-Filter-Labels, | |
| Test-Constrained-Merger-Trees, | |
| Test-Millennium-Tree-Builder, | |
| Test-Output, | |
| Test-Output-Tree-Contiguousity, | |
| Test-Parameter-Validation, | |
| Test-Parameter-Migration, | |
| Test-Perl-Modules, | |
| Test-Reproducibility, | |
| Test-Split-Forests, | |
| Test-Star-Formation-Histories-Adaptive, | |
| Test-State-Restore, | |
| Test-Checkpointing, | |
| Test-Stellar-Mass-Weighted-Ages, | |
| Test-Tidal-Tracks, | |
| Test-galacticStructureState-Deallocate-Bug, | |
| Test-Inactive-Numerics, | |
| Test-Impulsive-Heating, | |
| Test-Halo-Triaxiality, | |
| Test-Threaded-Evolution, | |
| Test-Outputs-01, | |
| Test-Outputs-02, | |
| Test-Outputs-03, | |
| Test-Outputs-04, | |
| Test-Outputs-05, | |
| Test-Outputs-06, | |
| Test-Outputs-07, | |
| Test-Outputs-08, | |
| Test-Outputs-09, | |
| Test-Outputs-10, | |
| Regressions-Bug-1053153, | |
| Regressions-Bug-1066052, | |
| Regressions-Bug-711424, | |
| Regressions-Bug-725315, | |
| Regressions-Coincident-Merger-And-Branch-Jump, | |
| Regressions-Cole2000-Tree-Builder-WDM-Node-Well-Ordering, | |
| Regressions-Deadlock-Merge-Target-In-Descendent-Of-Mergee-2, | |
| Regressions-Deadlock-Merge-Target-In-Descendent-Of-Mergee, | |
| Regressions-Final-Time-Before-Output-Time, | |
| Regressions-Immediate-Sub-Sub-Merger-Then-Branch-Jump, | |
| Regressions-Initial-Satellite-No-Primary-Progenitor, | |
| Regressions-Issue-142, | |
| Regressions-Linear-Growth-For-Future-Model, | |
| Regressions-Ludlow-Scale-Set-Before-Tree-Initialization, | |
| Regressions-Merger-At-Final-Time-In-Tree, | |
| Regressions-Merger-Tree-Box-Size-Weight, | |
| Regressions-Particulate, | |
| Regressions-Satellite-Preset-Bound-Mass-Non-Zero, | |
| Regressions-Set-Properties, | |
| Regressions-Subhalo-Merges-At-Final-Time-Of-Tree, | |
| Regressions-Subhalo-Two-Consecutive-Mergers, | |
| Regressions-Tree-With-Initial-Satellite-In-Progenitorless-Host, | |
| Regressions-Tree-With-No-Primary-Progenitor, | |
| Regressions-Bar-Instability-FPE, | |
| Test-Methods-01, | |
| Test-Methods-02, | |
| Test-Methods-03, | |
| Test-Methods-04, | |
| Test-Methods-05, | |
| Test-Methods-06, | |
| Test-Methods-07, | |
| Test-Methods-08, | |
| Test-Methods-09, | |
| Test-Methods-10, | |
| Test-Methods-11, | |
| Test-Methods-12, | |
| Test-Methods-13, | |
| Test-Methods-14, | |
| Test-Methods-15, | |
| Test-Methods-16, | |
| Test-Methods-17, | |
| Test-Methods-18, | |
| Test-Methods-19, | |
| Test-Methods-20, | |
| Test-MPI-State-Restore, | |
| Test-MPI-Radiative-Transfer-Stromgren-Sphere, | |
| Test-MPI-MCMC, | |
| Test-MPI-Methods-01, | |
| Test-MPI-Methods-02, | |
| Test-Python-Interface, | |
| Tests-Hashes-Cryptographic-MacOS, | |
| Test-Python-Interface-MacOS, | |
| Validate ] | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Download artifacts (executable-linux) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec | |
| - name: Download artifacts (library-linux) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-library | |
| - name: Download artifacts (docs) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-docs | |
| - name: Download artifacts (tools-linux) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-tools | |
| - name: Upload assets to release | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release upload bleeding-edge ./Galacticus.exe ./libgalacticus.tar.bz2 ./Galacticus_Usage.pdf ./Galacticus_Physics.pdf ./Galacticus_Development.pdf ./Galacticus_Source.pdf ./tools.tar.bz2 --clobber | |
| rm ./Galacticus.exe ./libgalacticus.tar.bz2 ./Galacticus_Usage.pdf ./Galacticus_Physics.pdf ./Galacticus_Development.pdf ./Galacticus_Source.pdf ./tools.tar.bz2 | |
| - name: Download artifacts (executable-macos) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-exec-MacOS | |
| - name: Download artifacts (debug-macos) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-debug-MacOS | |
| - name: Download artifacts (library-macos) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-library-MacOS | |
| - name: Download artifacts (tools-macos) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: galacticus-tools-MacOS | |
| - name: Upload assets to release | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release upload bleeding-edge ./Galacticus_MacOS.exe ./libgalacticusMacOS.zip ./toolsMacOS.zip ./debugSymbolsMacOS.zip --clobber | |
| rm ./Galacticus_MacOS.exe ./libgalacticusMacOS.zip ./toolsMacOS.zip ./debugSymbolsMacOS.zip | |
| - name: Download artifacts (perf-darkMatterOnlySubhalos) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: perf-darkMatterOnlySubhalos | |
| - name: Download artifacts (perf-milkyWay) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: perf-milkyWay | |
| - name: Download artifacts (perf-milkyWay-SIDM) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: perf-milkyWay-SIDM | |
| - name: Download artifacts (perf-darkMatterOnlySubhalos-gprof) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: perf-darkMatterOnlySubhalos-gprof | |
| - name: Download artifacts (perf-milkyWay-gprof) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: perf-milkyWay-gprof | |
| - name: Download artifacts (perf-milkyWay-SIDM-gprof) | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: perf-milkyWay-SIDM-gprof | |
| - name: Upload assets to release | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| gh release upload bleeding-edge ./darkMatterOnlySubhalos.perf.bz2 ./milkyWay.perf.bz2 ./milkyWay_SIDM.perf.bz2 ./darkMatterOnlySubhalos.gprof.bz2 ./milkyWay.gprof.bz2 ./milkyWay_SIDM.gprof.bz2 --clobber | |
| rm ./darkMatterOnlySubhalos.perf.bz2 ./milkyWay.perf.bz2 ./milkyWay_SIDM.perf.bz2 ./darkMatterOnlySubhalos.gprof.bz2 ./milkyWay.gprof.bz2 ./milkyWay_SIDM.gprof.bz2 | |
| Update-Release-Tag: | |
| runs-on: ubuntu-latest | |
| if: github.ref == 'refs/heads/master' | |
| needs: Deploy | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Update tag | |
| run: | | |
| git tag -f bleeding-edge | |
| git push origin -f bleeding-edge | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - run: echo "This job's status is ${{ job.status }}." |