Merge pull request #19 from gaelforget/reduce_size

skip octave,r,warmup -- add patch_MITgcm

.github/workflows/binder.yaml

@@ -3,7 +3,7 @@ on:
   push:
     branches:
       - main
-      - Climatology_plus_cmake_bis
+      - reduce_size
 jobs:
   binder:
     runs-on: ubuntu-latest

Dockerfile

@@ -45,11 +45,10 @@ RUN echo 'alias julia="${mainpath}/.juliaup/bin/julia --project=${mainpath}"' >>
 RUN conda config --env --add channels conda-forge
 RUN conda config --env --add channels r
 RUN conda install numpy xarray pandas
-RUN conda install octave_kernel texinfo r-irkernel
 
 RUN curl -fsSL https://install.julialang.org | sh -s -- --yes
 
-RUN ${mainpath}/.juliaup/bin/julia --project=${mainpath} -e "import Pkg; Pkg.instantiate();"
+RUN ${mainpath}/.juliaup/bin/julia --project=${mainpath} -e "import Pkg; Pkg.update(); Pkg.instantiate();"
 RUN ${mainpath}/.juliaup/bin/julia --project=${mainpath} ${mainpath}/src/warmup.jl
 
 RUN jupyter lab build && \

binder/Dockerfile

@@ -1,2 +1,2 @@
 ### DO NOT EDIT THIS FILE! This Is Automatically Generated And Will Be Overwritten ###
-FROM gaelforget/ecco-docker:09d4f28433a1
+FROM gaelforget/ecco-docker:8699540460fd

src/patch_MITgcm.jl

@@ -0,0 +1,14 @@
+let 
+    import MITgcm, Downloads
+
+    url0="https://raw.githubusercontent.com/MITgcm/MITgcm/refs/heads/master/"
+    url1=url0*"tools/build_options/linux_arm64_gfortran"
+    url2=url0*"tools/genmake2"
+
+    path0=MITgcm.default_path()
+    path1=joinpath(path0,"tools","build_options","linux_arm64_gfortran")
+    path2=joinpath(path0,"tools","genmake2")
+
+    Downloads.download(url1,path1)
+    Downloads.download(url2,path2)
+end

src/warmup.jl

@@ -1,12 +1,21 @@
-using Pluto, CairoMakie, Downloads, IJulia, Pkg
 
+using Pluto, CairoMakie, Downloads, IJulia, Pkg
 import MITgcm, Climatology
-import MITgcm.ClimateModels, MITgcm.MeshArrays
-import MITgcm.ClimateModels.git
 
 ENV["DATADEPS_ALWAYS_ACCEPT"]=true
 MITgcm.set_environment_variables_to_default()
 
+## need to download and patch MITgcm 
+# https://github.com/MITgcm/MITgcm/pull/849
+include("patch_MITgcm.jl")
+
+##
+
+if false
+
+import MITgcm.ClimateModels, MITgcm.MeshArrays
+import MITgcm.ClimateModels.git
+
 ##
 
 p0=pathof(MITgcm)
@@ -52,3 +61,4 @@ Pkg.instantiate()
 include(nb)
 Pkg.activate()
 
+end #if false