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Add new tilt_angle transformation function #486

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fa20baf
Add tilt transformation
leomiquelutti Mar 29, 2024
cca42cf
corrected format
leomiquelutti Mar 29, 2024
11bcd70
fixed formatting in `_transformations.py`.
leomiquelutti Mar 29, 2024
f531eb5
changed g_z signal in the test of tilt
leomiquelutti Apr 4, 2024
1bc80af
Update harmonica/_transformations.py
leomiquelutti Apr 15, 2024
b4c687d
make doc still seems failing
leomiquelutti Apr 15, 2024
92278eb
Merge branch 'add_tilt' of https://github.com/leomiquelutti/harmonica…
leomiquelutti Apr 15, 2024
1406c29
Update harmonica/_transformations.py
leomiquelutti Jul 1, 2024
dc06c3f
Update harmonica/_transformations.py
leomiquelutti Jul 1, 2024
5fa4572
Update harmonica/tests/test_transformations.py
leomiquelutti Jul 1, 2024
3ec18fd
Update harmonica/tests/test_transformations.py
leomiquelutti Jul 1, 2024
6ace014
Update harmonica/_transformations.py
leomiquelutti Jul 1, 2024
045eda0
fixed formatting
leomiquelutti Jul 1, 2024
9767828
Merge branch 'add_tilt' of https://github.com/leomiquelutti/harmonica…
leomiquelutti Jul 1, 2024
7a76c13
Update _transformations.py
leomiquelutti Jul 1, 2024
ee1d61f
Update test_transformations.py
leomiquelutti Jul 2, 2024
febfb19
fix format/style
leomiquelutti Jul 2, 2024
c58a473
Specify units of the returned tilt DataArray
santisoler Aug 12, 2024
7fe9493
Fix typo
santisoler Aug 12, 2024
9cb90fc
Uncomment line in example
santisoler Aug 12, 2024
379bcc6
Uncomment line in example
santisoler Aug 12, 2024
d7abc9b
Merge branch 'main' into add_tilt
santisoler Aug 12, 2024
2a9dee2
Minor improvements to the plots
santisoler Aug 12, 2024
d738296
Merge branch 'main' into add_tilt
santisoler Aug 12, 2024
77f9de7
Merge branch 'main' into add_tilt
santisoler Aug 12, 2024
eb9696e
Merge branch 'main' into add_tilt
santisoler Aug 12, 2024
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1 change: 1 addition & 0 deletions doc/api/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,7 @@ Apply well known transformations regular gridded potential fields data.
gaussian_highpass
reduction_to_pole
total_gradient_amplitude
tilt_angle

Frequency domain filters
------------------------
Expand Down
1 change: 1 addition & 0 deletions doc/references.rst
Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,7 @@ References
.. [Grombein2013] Grombein, T., Seitz, K., Heck, B. (2013), Optimized formulas for the gravitational field of a tesseroid, Journal of Geodesy. doi:`10.1007/s00190-013-0636-1 <https://doi.org/10.1007/s00190-013-0636-1>`__
.. [Hofmann-WellenhofMoritz2006] Hofmann-Wellenhof, B., & Moritz, H. (2006). Physical Geodesy (2nd, corr. ed. 2006 edition ed.). Wien ; New York: Springer.
.. [LiGotze2001] Li, X. and H. J. Gotze, 2001, Tutorial: Ellipsoid, geoid, gravity, geodesy, and geophysics, Geophysics, 66(6), p. 1660-1668, doi:`10.1190/1.1487109 <https://doi.org/10.1190/1.1487109>`__
.. [MillerSingh1994] Miller, H. G., & Singh, V. (1994). Potential field tilt — A new concept for location of potential field sources. Journal of Applied Geophysics, 32(3), 213–217. doi:`10.1016/0926-9851(94)90002-7 <https://doi.org/10.1016/0926-9851(94)90002-7>`__
.. [Nagy2000] Nagy, D., Papp, G. & Benedek, J.(2000). The gravitational potential and its derivatives for the prism. Journal of Geodesy 74: 552. doi:`10.1007/s001900000116 <https://doi.org/10.1007/s001900000116>`__
.. [Nagy2002] Nagy, D., Papp, G. & Benedek, J.(2002). Corrections to "The gravitational potential and its derivatives for the prism". Journal of Geodesy. doi:`10.1007/s00190-002-0264-7 <https://doi.org/10.1007/s00190-002-0264-7>`__
.. [Oliveira2021] Oliveira Jr, Vanderlei C. and Uieda, Leonardo and Barbosa, Valeria C. F.. Sketch of three coordinate systems: Geocentric Cartesian, Geocentric Geodetic, and Topocentric Cartesian. figshare. doi: `10.6084/m9.figshare.15044241.v1 <https://doi.org/10.6084/m9.figshare.15044241.v1>`__
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122 changes: 122 additions & 0 deletions examples/transformations/tilt.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,122 @@
# Copyright (c) 2018 The Harmonica Developers.
# Distributed under the terms of the BSD 3-Clause License.
# SPDX-License-Identifier: BSD-3-Clause
#
# This code is part of the Fatiando a Terra project (https://www.fatiando.org)
#
"""
Tilt of a regular grid
======================
"""
import ensaio
import pygmt
import verde as vd
import xarray as xr
import xrft

import harmonica as hm

# Fetch magnetic grid over the Lightning Creek Sill Complex, Australia using
# Ensaio and load it with Xarray
fname = ensaio.fetch_lightning_creek_magnetic(version=1)
magnetic_grid = xr.load_dataarray(fname)

# Pad the grid to increase accuracy of the FFT filter
pad_width = {
"easting": magnetic_grid.easting.size // 3,
"northing": magnetic_grid.northing.size // 3,
}
# drop the extra height coordinate
magnetic_grid_no_height = magnetic_grid.drop_vars("height")
magnetic_grid_padded = xrft.pad(magnetic_grid_no_height, pad_width)

# Compute the tilt of the grid
tilt_grid = hm.tilt_angle(magnetic_grid_padded)

# Unpad the tilt grid
tilt_grid = xrft.unpad(tilt_grid, pad_width)

# # Show the tilt
# print("\nTilt:\n", tilt_grid)
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# Define the inclination and declination of the region by the time of the data
# acquisition (1990).
inclination, declination = -52.98, 6.51

# Apply a reduction to the pole over the magnetic anomaly grid. We will assume
# that the sources share the same inclination and declination as the
# geomagnetic field.
rtp_grid_padded = hm.reduction_to_pole(
magnetic_grid_padded, inclination=inclination, declination=declination
)

# Unpad the reduced to the pole grid
rtp_grid = xrft.unpad(rtp_grid_padded, pad_width)

# Compute the tilt of the padded rtp grid
tilt_rtp_grid = hm.tilt_angle(rtp_grid_padded)

# Unpad the tilt grid
tilt_rtp_grid = xrft.unpad(tilt_rtp_grid, pad_width)

# # Show the tilt from RTP
# print("\nTilt from RTP:\n", tilt_rtp_grid)
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# Plot original magnetic anomaly, its RTP, and the tilt of both
fig = pygmt.Figure()
with fig.subplot(nrows=2, ncols=2, figsize=("28c", "30c"), sharey="l"):
scale = 0.5 * vd.maxabs(magnetic_grid, rtp_grid)
with fig.set_panel(panel=0):
# Make colormap of data
pygmt.makecpt(cmap="polar+h", series=[-scale, scale], background=True)
# Plot magnetic anomaly grid
fig.grdimage(
grid=magnetic_grid,
projection="X?",
cmap=True,
# frame=["a", "+tMagnetic anomaly intensity (TMI)"],
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Would be nice to add a title here. Otherwise, we should remove this line.

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Hi @santisoler,

I left the frames (titles) with comments because I could not add titles to the images in a way that would look good. Right now I am struggling with the installation of pygmt (again, I always suffer with that under Windows) to try to solve it.

If you would like to address it, I encourage you 😁. Otherwise, I will probably remove them.

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Oh, great. No worries. I applied a few changes to the plots so they look better. Thanks for adding the example though!

)
with fig.set_panel(panel=1):
# Make colormap of data
pygmt.makecpt(cmap="polar+h", series=[-scale, scale], background=True)
# Plot reduced to the pole magnetic anomaly grid
fig.grdimage(
grid=rtp_grid,
projection="X?",
cmap=True,
# frame=["a", "+tTMI reduced to the pole (RTP)"],
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Also this one

)
# Add colorbar
fig.colorbar(
frame='af+l"Magnetic anomaly intensity [nT]"',
position="JMR+o1/1c+e",
)
scale = 0.6 * vd.maxabs(tilt_grid, tilt_rtp_grid)
with fig.set_panel(panel=2):
# Make colormap for tilt (saturate it a little bit)
pygmt.makecpt(cmap="polar+h", series=[-scale, scale], background=True)
# Plot tilt
fig.grdimage(
grid=tilt_grid,
projection="X?",
cmap=True,
# frame=["a", "+tTilt from TMI"],
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Also this one.

)
# Add colorbar
with fig.set_panel(panel=3):
# Make colormap for tilt rtp (saturate it a little bit)
scale = 0.6 * vd.maxabs(tilt_rtp_grid)
pygmt.makecpt(cmap="polar+h", series=[-scale, scale], background=True)
# Plot tilt
fig.grdimage(
grid=tilt_rtp_grid,
projection="X?",
cmap=True,
# frame=["a", "+tTilt from RTP"],
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And this one.

)
# Add colorbar
fig.colorbar(
frame='af+l"Tilt [rad]"',
position="JMR+o1/1c+e",
)
fig.show()
1 change: 1 addition & 0 deletions harmonica/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@
gaussian_highpass,
gaussian_lowpass,
reduction_to_pole,
tilt_angle,
total_gradient_amplitude,
upward_continuation,
)
Expand Down
64 changes: 63 additions & 1 deletion harmonica/_transformations.py
Original file line number Diff line number Diff line change
Expand Up @@ -343,7 +343,7 @@ def reduction_to_pole(

def total_gradient_amplitude(grid):
r"""
Calculate the total gradient amplitude a magnetic field grid
Calculates the total gradient amplitude of a potential field grid

Compute the total gradient amplitude of a regular gridded potential field
`M`. The horizontal derivatives are calculated though finite-differences
Expand Down Expand Up @@ -393,6 +393,68 @@ def total_gradient_amplitude(grid):
return np.sqrt(gradient[0] ** 2 + gradient[1] ** 2 + gradient[2] ** 2)


def tilt_angle(grid):
r"""
Calculates the tilt angle of a potential field grid

Compute the tilt of a regular gridded potential field
:math:`M`. The horizontal derivatives are calculated
though finite-differences while the upward derivative
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is calculated using FFT.

Parameters
----------
grid : :class:`xarray.DataArray`
A two dimensional :class:`xarray.DataArray` whose coordinates are
evenly spaced (regular grid). Its dimensions should be in the following
order: *northing*, *easting*. Its coordinates should be defined in the
same units.

Returns
-------
tilt_grid : :class:`xarray.DataArray`
A :class:`xarray.DataArray` after calculating the
tilt of the passed ``grid``.
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Notes
-----
The tilt is calculated as:

.. math::

\text{tilt}(f) = \tan^{-1} \left(
\frac{
\frac{\partial M}{\partial z}
}{
\sqrt{
\left( \frac{\partial M}{\partial x} \right)^2
+
\left( \frac{\partial M}{\partial y} \right)^2
}
}
\right)

where :math:`M` is the regularly gridded potential field.

References
----------
[Blakely1995]_
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[MillerSingh1994]_
"""
# Run sanity checks on the grid
grid_sanity_checks(grid)
# Calculate the gradients of the grid
gradient = (
derivative_easting(grid, order=1),
derivative_northing(grid, order=1),
derivative_upward(grid, order=1),
)
# Calculate and return the tilt
horiz_deriv = np.sqrt(gradient[0] ** 2 + gradient[1] ** 2)
tilt = np.arctan2(gradient[2], horiz_deriv)
return tilt


def _get_dataarray_coordinate(grid, dimension_index):
"""
Return the name of the easting or northing coordinate in the grid
Expand Down
2 changes: 1 addition & 1 deletion harmonica/filters/_fft.py
Original file line number Diff line number Diff line change
Expand Up @@ -79,5 +79,5 @@ def ifft(fourier_transform, true_phase=True, true_amplitude=True, **kwargs):
fourier_transform,
true_phase=true_phase,
true_amplitude=true_amplitude,
**kwargs
**kwargs,
)
8 changes: 1 addition & 7 deletions harmonica/tests/test_tesseroid.py
Original file line number Diff line number Diff line change
Expand Up @@ -633,13 +633,7 @@ def spherical_shell_analytical(top, bottom, density, radius):
homogeneous spherical shell
"""
potential = (
4
/ 3
* np.pi
* GRAVITATIONAL_CONST
* density
* (top**3 - bottom**3)
/ radius
4 / 3 * np.pi * GRAVITATIONAL_CONST * density * (top**3 - bottom**3) / radius
)
analytical = {
"potential": potential,
Expand Down
72 changes: 72 additions & 0 deletions harmonica/tests/test_transformations.py
Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@
gaussian_highpass,
gaussian_lowpass,
reduction_to_pole,
tilt_angle,
total_gradient_amplitude,
upward_continuation,
)
Expand Down Expand Up @@ -591,6 +592,77 @@ def test_invalid_grid_with_nans(self, sample_potential):
total_gradient_amplitude(sample_potential)


class TestTilt:
"""
Test tilt function
"""

def test_against_synthetic(
self, sample_potential, sample_g_n, sample_g_e, sample_g_z
):
"""
Test tilt function against the synthetic model
"""
# Pad the potential field grid to improve accuracy
pad_width = {
"easting": sample_potential.easting.size // 3,
"northing": sample_potential.northing.size // 3,
}
# need to drop upward coordinate (bug in xrft)
potential_padded = xrft.pad(
sample_potential.drop_vars("upward"),
pad_width=pad_width,
)
# Calculate the tilt and unpad it
tilt_grid = tilt_angle(potential_padded)
tilt_grid = xrft.unpad(tilt_grid, pad_width)
# Compare against g_tilt (trim the borders to ignore boundary effects)
trim = 6
tilt_grid = tilt_grid[trim:-trim, trim:-trim]
g_e = sample_g_e[trim:-trim, trim:-trim]
g_n = sample_g_n[trim:-trim, trim:-trim]
g_z = sample_g_z[trim:-trim, trim:-trim]
g_horiz_deriv = np.sqrt(g_e**2 + g_n**2)
g_tilt = np.arctan2(
-g_z, g_horiz_deriv
) # use -g_z to use the _upward_ derivative
rms = root_mean_square_error(tilt_grid, g_tilt)
assert rms / np.abs(tilt_grid).max() < 0.1

def test_invalid_grid_single_dimension(self):
"""
Check if tilt raises error on grid with single
dimension
"""
x = np.linspace(0, 10, 11)
y = x**2
grid = xr.DataArray(y, coords={"x": x}, dims=("x",))
with pytest.raises(ValueError, match="Invalid grid with 1 dimensions."):
tilt_angle(grid)

def test_invalid_grid_three_dimensions(self):
"""
Check if tilt raises error on grid with three
dimensions
"""
x = np.linspace(0, 10, 11)
y = np.linspace(-4, 4, 9)
z = np.linspace(20, 30, 5)
xx, yy, zz = np.meshgrid(x, y, z)
data = xx + yy + zz
grid = xr.DataArray(data, coords={"x": x, "y": y, "z": z}, dims=("y", "x", "z"))
with pytest.raises(ValueError, match="Invalid grid with 3 dimensions."):
tilt_angle(grid)

def test_invalid_grid_with_nans(self, sample_potential):
"""
Check if tilt raises error if grid contains nans
"""
sample_potential.values[0, 0] = np.nan
with pytest.raises(ValueError, match="Found nan"):
tilt_angle(sample_potential)


class Testfilter:
"""
Test filter result against the output from oasis montaj
Expand Down