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66 Open 262 Closed
66 Open 262 Closed
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Issues list

How much sequencing data do I need?
#356 opened Nov 28, 2024 by BrigidaGallone
2
Grouping phased fasta files for phyluce_assembly_match_contigs_to_probes
#355 opened Nov 26, 2024 by rhyacotritonriot
Using the by-locus function when exploding monolithic fasta
#354 opened Nov 6, 2024 by amateos1998
1
Samples with multiple lane reads
#351 opened Oct 28, 2024 by jb23590
3
AttributeError: 'NoneType' object has no attribute 'groups'
#350 opened Sep 25, 2024 by Genomics-Bhuwan
3
copy_and_build_index error in phyluce mapping
#349 opened Sep 16, 2024 by kmontana13
How to get joined_allele_sequences_all_samples.fasta
#345 opened Jul 16, 2024 by emmajochim
4
phyluce_assembly_assemblo_spades [contig length issue]
#344 opened Jul 11, 2024 by kimchafer
4
phyluce installation error at the conda env update --name phyluce-1.7.3-x86 ... stage
#343 opened Jun 29, 2024 by kwinker
6
Adding SRR outgroups to the Phyluce pipeline
#342 opened Jun 19, 2024 by bbessesen
20
phyluce_probe_run_multiple_lastzs_sqlite issue
#340 opened May 23, 2024 by jovana03
1
phyluce_probe_run_multiple_lastzs_sqlite --probefile
#338 opened Apr 23, 2024 by Jami5on
1
phyluce_assembly_match_contigs_to_barcodes, OSError: lastz: b'Can\'t understand "/Users/rodolfoprobst/Library/CloudStorage/Box-Box/Myrmelachista_all"\n(my guess) perhaps you have too many sequence files in the command\n
#335 opened Apr 8, 2024 by probstrodolfo
phyluce_assembly_get_match_counts, possible config issue
#334 opened Apr 3, 2024 by bbessesen
9
WARNING - Did not clean all fastq/fasta files
#333 opened Apr 1, 2024 by bbessesen
5
ConfigParser.NoSectionError: No section: 'names'
#332 opened Mar 17, 2024 by Jami5on
3
sqlite error in "Determining locus presence in multiple genomes" step of Tutorial IV
#329 opened Mar 1, 2024 by kautumn
Keep duplicates "contigs hitting multiple probes"
#328 opened Feb 14, 2024 by sbabbbie
3
Help: Assembly stuck on "Processing contigs"
#327 opened Feb 7, 2024 by chloejelley
3
"phyluce_ncbi_prep_uce_align_files_for_ncbi_targeted_locus_db" creates empty fsa and tbl files
#326 opened Feb 5, 2024 by claudiavaga
1
stampy: Error: Overfull hash table
#324 opened Nov 30, 2023 by Ruben9161
2
Error in the "phyluce_assembly_match_contigs_to_probes.job" step
#323 opened Nov 20, 2023 by LauraGonzalezMozo
1
No such column error in phyluce_assembly_get_fastas_from_match_counts
#320 opened Oct 11, 2023 by louisfnastasi
1
Problem with phyluce_assembly_match_contigs_to_probes for Trinity and Spades assemblies
#316 opened Sep 28, 2023 by charbeez
2
Phasing snps fasta files
#315 opened Sep 19, 2023 by nicolashazzi23
13
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