Merge branch 'european-modelling-hubs:main' into main

european-modelling-hubs · Oct 13, 2023 · 6fb92c9 · 6fb92c9
2 parents b146dab + 26b258c
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diff --git a/README.md b/README.md
@@ -169,15 +169,15 @@ Data:
 > Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel
 > Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Jan Trnka,
 > Guillaume Obozinski, … Sebastian Funk. (2023). European Covid-19
-> Forecast Hub (v2023.09.28) \[Data set\]. Zenodo.
-> <https://doi.org/10.5281/zenodo.8386303>
+> Forecast Hub (v2023.10.05) \[Data set\]. Zenodo.
+> <https://doi.org/10.5281/zenodo.8410164>
 
 <details>
 
 <summary>Bibtex</summary>
 
 ``` bibtex
-@dataset{katharine_sherratt_2023_8386303,
+@dataset{katharine_sherratt_2023_8410164,
   author       = {Katharine Sherratt and
                   Hugo Gruson and
                   Helen Johnson and
@@ -301,12 +301,12 @@ Data:
                   Johannes Bracher and
                   Sebastian Funk},
   title        = {European Covid-19 Forecast Hub},
-  month        = sep,
+  month        = oct,
   year         = 2023,
   publisher    = {Zenodo},
-  version      = {v2023.09.28},
-  doi          = {10.5281/zenodo.8386303},
-  url          = {https://doi.org/10.5281/zenodo.8386303}
+  version      = {v2023.10.05},
+  doi          = {10.5281/zenodo.8410164},
+  url          = {https://doi.org/10.5281/zenodo.8410164}
 }
 ```
 

diff --git a/code/ensemble/EuroCOVIDhub/criteria/criteria-2023-10-02.csv b/code/ensemble/EuroCOVIDhub/criteria/criteria-2023-10-02.csv
diff --git a/code/ensemble/EuroCOVIDhub/criteria/criteria-2023-10-09.csv b/code/ensemble/EuroCOVIDhub/criteria/criteria-2023-10-09.csv
diff --git a/code/ensemble/EuroCOVIDhub/method-by-date.csv b/code/ensemble/EuroCOVIDhub/method-by-date.csv
@@ -131,3 +131,5 @@ forecast_date,method
 2023-09-11,median
 2023-09-18,median
 2023-09-25,median
+2023-10-02,median
+2023-10-09,median
diff --git a/code/validation/check_truth.txt b/code/validation/check_truth.txt
@@ -4530,3 +4530,179 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-
 
 - The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Netherlands', 'Slovakia'].
 
+Latest check of truth data: 2023-10-04
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-23:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Malta', 'Poland', 'Portugal', 'Romania', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-23:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Portugal', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-09-30:
+
+- The following locations are missing: ['Italy'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-09-30:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Slovakia'].
+
+Latest check of truth data: 2023-10-05
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-23:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Malta', 'Poland', 'Portugal', 'Romania', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-23:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Portugal', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-09-30:
+
+- The following locations are missing: ['Italy'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-09-30:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Slovakia'].
+
+Latest check of truth data: 2023-10-06
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-23:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Malta', 'Poland', 'Portugal', 'Romania', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-23:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Portugal', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-09-30:
+
+- The following locations are missing: ['Italy'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-09-30:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Slovakia'].
+
+Latest check of truth data: 2023-10-07
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-30:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Malta', 'Poland', 'Portugal', 'Romania', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-30:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Portugal', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Czechia', 'Italy', 'Netherlands'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Netherlands', 'Slovakia'].
+
+Latest check of truth data: 2023-10-08
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-30:
+
+- The following locations are missing: ['Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Lithuania', 'Malta', 'Portugal', 'Romania', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-30:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Italy', 'Netherlands'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Netherlands', 'Slovakia'].
+
+Latest check of truth data: 2023-10-09
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-30:
+
+- The following locations are missing: ['Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Lithuania', 'Malta', 'Portugal', 'Romania', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-30:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Italy', 'Netherlands'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Netherlands', 'Slovakia'].
+
+Latest check of truth data: 2023-10-10
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-30:
+
+- The following locations are missing: ['Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Lithuania', 'Malta', 'Portugal', 'Romania', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-30:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Italy'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Slovakia'].
+
+Latest check of truth data: 2023-10-11
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-09-30:
+
+- The following locations are missing: ['Croatia', 'Denmark', 'Estonia', 'Finland', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Lithuania', 'Malta', 'Portugal', 'Romania', 'Slovakia', 'Slovenia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-09-30:
+
+- The following locations are missing: ['Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Estonia', 'Finland', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Lithuania', 'Luxembourg', 'Malta', 'Netherlands', 'Norway', 'Portugal', 'Slovakia', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Italy'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-10-07:
+
+- The following locations are missing: ['Czechia', 'Ireland', 'Italy', 'Slovakia'].
+