EuroCOVIDhub-baseline's automated submission #2378
Workflow file for this run
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| name: Link to submission preview | |
| on: | |
| # Instead of pull_request to be able to post comments | |
| pull_request_target: | |
| branches: main | |
| paths: | |
| - 'data-processed/**' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }} | |
| cancel-in-progress: true | |
| jobs: | |
| submission_preview: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev | |
| # This workflow cannot work with renv since we never check out the repo. | |
| - name: Install R dependencies | |
| run: | | |
| install.packages('gh') | |
| shell: Rscript {0} | |
| - name: Post comment linking to preview shiny app | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: | | |
| source("https://gist.github.com/Bisaloo/db50c50922dc5d8d71791fe210e625be/raw/9eff642b8f481f34de2671e940327645498f972f/link_preview_app.R") | |
| try({ | |
| links <- link_preview( | |
| gh_repo = Sys.getenv("GITHUB_REPOSITORY"), | |
| pr_number = Sys.getenv("PR_NUMBER"), | |
| data_folder = "data-processed", | |
| app_location = "https://forecasthub.shinyapps.io/covid19-forecast-hub-europe/" | |
| ) | |
| message("Preview link:\n ", paste(links, collapse = "\n ")) | |
| if (!is.null(links)) { | |
| gh::gh( | |
| "/repos/{gh_repo}/issues/{pr_number}/comments", | |
| .method = "POST", | |
| gh_repo = Sys.getenv("GITHUB_REPOSITORY"), | |
| pr_number = Sys.getenv("PR_NUMBER"), | |
| accept = "application/vnd.github.v3+json", | |
| body = paste(c("Preview of submitted forecast:", links), collapse = "\n\n") | |
| ) | |
| } | |
| }, silent = TRUE) | |
| shell: Rscript {0} |