Get data (ECDC/OWID) #596

	name: "Get data (ECDC/OWID)"
	on:
	workflow_dispatch:
	schedule:
	- cron: "7 12 * * *"

	jobs:
	get_data:
	if: github.repository_owner == 'european-modelling-hubs'
	runs-on: ubuntu-20.04
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- uses: actions/checkout@v3

	- uses: r-lib/actions/setup-r@v2
	with:
	install-r: false
	use-public-rspm: true

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev libopenblas-dev

	- uses: r-lib/actions/setup-renv@v2

	- name: Hospitalisation Truth
	run: \|
	Rscript 'code/auto_download/data-download.R'
	Rscript 'code/auto_download/process-owid-ecdc.r'
	Rscript 'code/auto_download/check-revisions-owid-ecdc.r'

	- name: Commit files
	run: \|
	git config user.email "[email protected]"
	git config user.name "GitHub Action - ECDC/OWID data"
	git add --all
	git commit -m "Data update - daily" \|\| echo "No changes to commit"
	git pull --rebase origin main
	git push
	echo "pushed to github"

	- name: Create issue about failure
	if: failure() && github.event_name != 'workflow_dispatch'
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	gh issue reopen 2628

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