Manual Ensemble #1


	name: "Manual Ensemble"
	on:
	workflow_dispatch:

	jobs:
	ensemble:
	if: github.repository_owner == 'european-modelling-hubs'
	runs-on: ubuntu-20.04
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- uses: actions/checkout@v3

	- uses: r-lib/actions/setup-r@v2
	with:
	install-r: false
	use-public-rspm: true

	- name: Install system dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install libudunits2-dev libcurl4-openssl-dev libgdal-dev libopenblas-base libopenblas-dev

	- uses: r-lib/actions/setup-renv@v2

	# Define a list of dates for which to compute the ensemble
	- name: Set dates list
	id: dates
	run: \|
	dates_list='["2024-07-08", "2024-07-15", "2024-07-22", "2024-07-29", "2024-08-05", "2024-08-12", "2024-08-19", "2024-08-26"]'
	echo "dates_list=$dates_list" >> $GITHUB_ENV

	- name: Loop over dates and create ensembles
	run: \|
	dates=$(echo ${{ env.dates_list }} \| jq -c '.[]')
	for date in $dates; do
	echo "Running ensemble script for date: $date"
	Rscript code/ensemble/EuroCOVIDhub/manual-weekly-ensemble.R $date
	done
	env:
	dates_list: ${{ env.dates_list }}

	- name: Commit files
	run: \|
	git config user.email "[email protected]"
	git config user.name "GitHub Action - mean ensemble"
	git add --all
	git diff-index --quiet HEAD \|\| git commit -m "Build ensemble"
	git pull --rebase origin main
	git push
	echo "pushed to github"

	- name: Create issue about failure
	if: failure() && github.event_name != 'workflow_dispatch'
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	gh issue reopen 2631

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