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  1. full_stack_ChromHMM_annotations full_stack_ChromHMM_annotations Public

    Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes

    Python 32 1

  2. ConsHMM ConsHMM Public

    Java 16 5

  3. ChromTime ChromTime Public

    Modeling Spatio-temporal Dynamics of Chromatin Marks

    Python 12 2

  4. LECIF LECIF Public

    Learning a genome-wide score of conservation at the functional genomics level between human and mouse

    Python 12 1

  5. mouse_fullStack_annotations mouse_fullStack_annotations Public

    mouse_fullStack_annotations

    Python 11

  6. X-CNN X-CNN Public

    Computational method for fine-mapping chromatin interactions, e.g., Hi-C

    Python 7 1

Repositories

Showing 10 of 19 repositories
  • csrep Public

    differential and summary chromatin states

    ernstlab/csrep’s past year of commit activity
    Python 5 0 0 0 Updated Dec 15, 2024
  • ChromActivity Public

    ChromActivity is a computational framework for the annotation of regulatory activity genomewide, through integration of data from epigenomic maps and multiple functional characterization assays.

    ernstlab/ChromActivity’s past year of commit activity
    Python 1 0 0 0 Updated Dec 2, 2024
  • ernstlab/ernstlab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 2, 2024
  • ENSAS Public Forked from luke0321li/ASDmodel

    Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence and sex information

    ernstlab/ENSAS’s past year of commit activity
    Python 0 1 0 0 Updated Nov 30, 2024
  • LEPAE Public

    Learning Evidence of Pairwise Association from Epigenomic and TF binding data

    ernstlab/LEPAE’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Nov 5, 2024
  • inpsyght_states Public

    ChromHMM and ConsHMM state-based analysis for InPSYght samples

    ernstlab/inpsyght_states’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 7, 2024
  • full_stack_ChromHMM_annotations Public

    Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes

    ernstlab/full_stack_ChromHMM_annotations’s past year of commit activity
    Python 32 1 0 0 Updated Jul 9, 2024
  • ernstlab/EpiVarIndividuals’s past year of commit activity
    R 0 0 0 0 Updated Jun 23, 2024
  • SharprSeq Public
    ernstlab/SharprSeq’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 31, 2024
  • CMImpute Public

    Cross-species and tissue imputation of species-level DNA methylation samples across mammalian species.

    ernstlab/CMImpute’s past year of commit activity
    Python 2 0 0 0 Updated Dec 7, 2023

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