refact: rename packages

equinor · Oct 16, 2024 · 93e315c · 93e315c
1 parent 4efcea6
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diff --git a/README.md b/README.md
@@ -105,17 +105,17 @@ NeqSim is built upon six base modules:
 >neqsim/thermo/: Main path for thermodynamic routines
 >neqsim/thermo/util/examples/: examples of use of Thermodynamic Models and Routines
 >
->neqsim/thermodynamicOperation: Main path for flash routines (TPflash, phase envelopes, etc.)
->neqsim/thermodynamicOperation/util/example/: examples of use of thermodynamic operations (eg. flash calculations etc.)
+>neqsim/thermodynamicoperation: Main path for flash routines (TPflash, phase envelopes, etc.)
+>neqsim/thermodynamicoperation/util/example/: examples of use of thermodynamic operations (eg. flash calculations etc.)
 >
->neqsim/physicalProperties: Main path for Physical Property methods
->neqsim/physicalProperties/util/examples/: Examples of use of physical properties calculations
+>neqsim/physicalproperties: Main path for Physical Property methods
+>neqsim/physicalproperties/util/examples/: Examples of use of physical properties calculations
 >
->neqsim/physicalProperties: Main path for Physical Property methods
->neqsim/physicalProperties/util/examples/: Examples of use of physical properties calculations
+>neqsim/physicalproperties: Main path for Physical Property methods
+>neqsim/physicalproperties/util/examples/: Examples of use of physical properties calculations
 >
->neqsim/processSimulation: Main path for Process Simulation Calculations
->neqsim/processSimulation/util/examples/: Examples of use of Process Simulation calculations
+>neqsim/processsimulation: Main path for Process Simulation Calculations
+>neqsim/processsimulation/util/examples/: Examples of use of Process Simulation calculations
 >
 >changelog.txt : History of what changed between each version.
 >license.txt: license document

diff --git a/pom.xml b/pom.xml
@@ -304,9 +304,9 @@
 				<version>0.8.12</version>
 				<configuration>
 					<excludes>
-						<exclude>neqsim/physicalProperties/util/parameterFitting/**/*</exclude>
-						<exclude>neqsim/statistics/util/parameterFitting/**/*</exclude>
-						<exclude>neqsim/PVTsimulation/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/physicalproperties/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/statistics/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/pvtsimulation/util/parameterfitting/**/*</exclude>
 					</excludes>
 				</configuration>
 				<executions>

diff --git a/pomJava21.xml b/pomJava21.xml
@@ -234,9 +234,9 @@
 				<version>0.8.12</version>
 				<configuration>
 					<excludes>
-						<exclude>neqsim/physicalProperties/util/parameterFitting/**/*</exclude>
-						<exclude>neqsim/statistics/util/parameterFitting/**/*</exclude>
-						<exclude>neqsim/PVTsimulation/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/physicalproperties/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/statistics/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/pvtsimulation/util/parameterfitting/**/*</exclude>
 					</excludes>
 				</configuration>
 				<executions>

diff --git a/pomJava8.xml b/pomJava8.xml
@@ -221,9 +221,9 @@
 				<version>0.8.12</version>
 				<configuration>
 					<excludes>
-						<exclude>neqsim/physicalProperties/util/parameterFitting/**/*</exclude>
-						<exclude>neqsim/statistics/util/parameterFitting/**/*</exclude>
-						<exclude>neqsim/PVTsimulation/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/physicalproperties/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/statistics/util/parameterfitting/**/*</exclude>
+						<exclude>neqsim/pvtsimulation/util/parameterfitting/**/*</exclude>
 					</excludes>
 				</configuration>
 				<executions>

diff --git a/...phaseReactorFlow/InterphasePackedBed.java → ...phasereactorflow/InterphasePackedBed.java b/...phaseReactorFlow/InterphasePackedBed.java → ...phasereactorflow/InterphasePackedBed.java
@@ -1,4 +1,4 @@
-package neqsim.fluidmechanics.flownode.fluidboundary.interphasetransportcoefficient.interphasetwophase.interphaseReactorFlow;
+package neqsim.fluidmechanics.flownode.fluidboundary.interphasetransportcoefficient.interphasetwophase.interphasereactorflow;
 
 import neqsim.fluidmechanics.flownode.FlowNodeInterface;
 
@@ -19,7 +19,8 @@ public class InterphasePackedBed extends InterphaseReactorFlow
    * Constructor for InterphasePackedBed.
    * </p>
    */
-  public InterphasePackedBed() {}
+  public InterphasePackedBed() {
+  }
 
   /**
    * <p>
@@ -77,21 +78,19 @@ public double calcInterphaseMassTransferCoefficient(int phase, double schmidtNum
     double massTrans = 0;
     if (phase == 1) {
       // massTrans = 0.0002;
-      redMassTrans =
-          0.0051 * Math.pow(node.getReynoldsNumber(phase), 0.67) * Math.pow(schmidtNumber, -0.5)
-              * Math.pow(node.getGeometry().getPacking().getSurfaceAreaPrVolume()
-                  * node.getGeometry().getPacking().getSize(), 0.4);
+      redMassTrans = 0.0051 * Math.pow(node.getReynoldsNumber(phase), 0.67) * Math.pow(schmidtNumber, -0.5)
+          * Math.pow(node.getGeometry().getPacking().getSurfaceAreaPrVolume()
+              * node.getGeometry().getPacking().getSize(), 0.4);
       massTrans = redMassTrans * Math.pow(
           node.getBulkSystem().getPhases()[phase].getPhysicalProperties().getKinematicViscosity()
               * gravity,
           1.0 / 3.0);
       System.out.println("mas trans liq " + massTrans);
     }
     if (phase == 0) {
-      redMassTrans =
-          3.6 * Math.pow(node.getReynoldsNumber(phase), 0.7) * Math.pow(schmidtNumber, 0.33)
-              * Math.pow(node.getGeometry().getPacking().getSurfaceAreaPrVolume()
-                  * node.getGeometry().getPacking().getSize(), -2.0);
+      redMassTrans = 3.6 * Math.pow(node.getReynoldsNumber(phase), 0.7) * Math.pow(schmidtNumber, 0.33)
+          * Math.pow(node.getGeometry().getPacking().getSurfaceAreaPrVolume()
+              * node.getGeometry().getPacking().getSize(), -2.0);
       massTrans = redMassTrans * node.getGeometry().getPacking().getSurfaceAreaPrVolume()
           * node.getBulkSystem().getPhases()[phase].getPhysicalProperties().getKinematicViscosity()
           / schmidtNumber;

diff --git a/...aseReactorFlow/InterphaseReactorFlow.java → ...asereactorflow/InterphaseReactorFlow.java b/...aseReactorFlow/InterphaseReactorFlow.java → ...asereactorflow/InterphaseReactorFlow.java
@@ -1,4 +1,4 @@
-package neqsim.fluidmechanics.flownode.fluidboundary.interphasetransportcoefficient.interphasetwophase.interphaseReactorFlow;
+package neqsim.fluidmechanics.flownode.fluidboundary.interphasetransportcoefficient.interphasetwophase.interphasereactorflow;
 
 import neqsim.fluidmechanics.flownode.FlowNodeInterface;
 import neqsim.fluidmechanics.flownode.fluidboundary.interphasetransportcoefficient.interphasetwophase.InterphaseTwoPhase;
@@ -17,7 +17,8 @@ public class InterphaseReactorFlow extends InterphaseTwoPhase {
    * Constructor for InterphaseReactorFlow.
    * </p>
    */
-  public InterphaseReactorFlow() {}
+  public InterphaseReactorFlow() {
+  }
 
   /**
    * <p>

diff --git a/...uidmechanics/flownode/twophasenode/twophasereactorflownode/TwoPhasePackedBedFlowNode.java b/...uidmechanics/flownode/twophasenode/twophasereactorflownode/TwoPhasePackedBedFlowNode.java
@@ -1,7 +1,7 @@
 package neqsim.fluidmechanics.flownode.twophasenode.twophasereactorflownode;
 
 import neqsim.fluidmechanics.flownode.FlowNodeInterface;
-import neqsim.fluidmechanics.flownode.fluidboundary.interphasetransportcoefficient.interphasetwophase.interphaseReactorFlow.InterphasePackedBed;
+import neqsim.fluidmechanics.flownode.fluidboundary.interphasetransportcoefficient.interphasetwophase.interphasereactorflow.InterphasePackedBed;
 import neqsim.fluidmechanics.flownode.twophasenode.TwoPhaseFlowNode;
 import neqsim.fluidmechanics.geometrydefinitions.GeometryDefinitionInterface;
 import neqsim.fluidmechanics.geometrydefinitions.reactor.ReactorData;
@@ -35,36 +35,36 @@ public TwoPhasePackedBedFlowNode() {
    * </p>
    *
    * @param system a {@link neqsim.thermo.system.SystemInterface} object
-   * @param pipe a {@link neqsim.fluidmechanics.geometrydefinitions.GeometryDefinitionInterface}
-   *        object
+   * @param pipe   a
+   *               {@link neqsim.fluidmechanics.geometrydefinitions.GeometryDefinitionInterface}
+   *               object
    */
   public TwoPhasePackedBedFlowNode(SystemInterface system, GeometryDefinitionInterface pipe) {
     super(system, pipe);
     this.flowNodeType = "packed bed";
     this.interphaseTransportCoefficient = new InterphasePackedBed(this);
-    this.fluidBoundary =
-        new neqsim.fluidmechanics.flownode.fluidboundary.heatmasstransfercalc.nonequilibriumfluidboundary.filmmodelboundary.KrishnaStandartFilmModel(
-            this);
+    this.fluidBoundary = new neqsim.fluidmechanics.flownode.fluidboundary.heatmasstransfercalc.nonequilibriumfluidboundary.filmmodelboundary.KrishnaStandartFilmModel(
+        this);
   }
 
   /**
    * <p>
    * Constructor for TwoPhasePackedBedFlowNode.
    * </p>
    *
-   * @param system a {@link neqsim.thermo.system.SystemInterface} object
+   * @param system           a {@link neqsim.thermo.system.SystemInterface} object
    * @param interphaseSystem a {@link neqsim.thermo.system.SystemInterface} object
-   * @param pipe a {@link neqsim.fluidmechanics.geometrydefinitions.GeometryDefinitionInterface}
-   *        object
+   * @param pipe             a
+   *                         {@link neqsim.fluidmechanics.geometrydefinitions.GeometryDefinitionInterface}
+   *                         object
    */
   public TwoPhasePackedBedFlowNode(SystemInterface system, SystemInterface interphaseSystem,
       GeometryDefinitionInterface pipe) {
     super(system, pipe);
     this.flowNodeType = "packed bed";
     this.interphaseTransportCoefficient = new InterphasePackedBed(this);
-    this.fluidBoundary =
-        new neqsim.fluidmechanics.flownode.fluidboundary.heatmasstransfercalc.nonequilibriumfluidboundary.filmmodelboundary.KrishnaStandartFilmModel(
-            this);
+    this.fluidBoundary = new neqsim.fluidmechanics.flownode.fluidboundary.heatmasstransfercalc.nonequilibriumfluidboundary.filmmodelboundary.KrishnaStandartFilmModel(
+        this);
   }
 
   /** {@inheritDoc} */
@@ -106,14 +106,12 @@ public double calcHydraulicDiameter() {
   /** {@inheritDoc} */
   @Override
   public double calcReynoldNumber() {
-    reynoldsNumber[1] =
-        getSuperficialVelocity(1) / getGeometry().getPacking().getSurfaceAreaPrVolume()
-            * bulkSystem.getPhases()[1].getPhysicalProperties().getDensity()
-            / bulkSystem.getPhases()[1].getPhysicalProperties().getViscosity();
-    reynoldsNumber[0] =
-        getSuperficialVelocity(0) / getGeometry().getPacking().getSurfaceAreaPrVolume()
-            * bulkSystem.getPhases()[0].getPhysicalProperties().getDensity()
-            / bulkSystem.getPhases()[0].getPhysicalProperties().getViscosity();
+    reynoldsNumber[1] = getSuperficialVelocity(1) / getGeometry().getPacking().getSurfaceAreaPrVolume()
+        * bulkSystem.getPhases()[1].getPhysicalProperties().getDensity()
+        / bulkSystem.getPhases()[1].getPhysicalProperties().getViscosity();
+    reynoldsNumber[0] = getSuperficialVelocity(0) / getGeometry().getPacking().getSurfaceAreaPrVolume()
+        * bulkSystem.getPhases()[0].getPhysicalProperties().getDensity()
+        / bulkSystem.getPhases()[0].getPhysicalProperties().getViscosity();
     System.out.println("rey liq " + reynoldsNumber[1]);
     System.out.println("rey gas " + reynoldsNumber[0]);
     return reynoldsNumber[1];
@@ -122,8 +120,7 @@ public double calcReynoldNumber() {
   /** {@inheritDoc} */
   @Override
   public double calcContactLength() {
-    interphaseContactArea =
-        pipe.getPacking().getSurfaceAreaPrVolume() * getLengthOfNode() * pipe.getArea();
+    interphaseContactArea = pipe.getPacking().getSurfaceAreaPrVolume() * getLengthOfNode() * pipe.getArea();
     return wallContactLength[0];
   }
 
@@ -152,8 +149,8 @@ public void update() {
     for (int componentNumber = 0; componentNumber < getBulkSystem().getPhases()[0]
         .getNumberOfComponents(); componentNumber++) {
       if (componentNumber == 1) {
-        double liquidMolarRate =
-            getFluidBoundary().getInterphaseMolarFlux(componentNumber) * getInterphaseContactArea(); // getInterphaseContactLength(0)*getGeometry().getNodeLength();
+        double liquidMolarRate = getFluidBoundary().getInterphaseMolarFlux(componentNumber)
+            * getInterphaseContactArea(); // getInterphaseContactLength(0)*getGeometry().getNodeLength();
         double gasMolarRate = -getFluidBoundary().getInterphaseMolarFlux(componentNumber)
             * getInterphaseContactArea(); // getInterphaseContactLength(0)*getGeometry().getNodeLength();
         System.out.println("liquidMolarRate" + liquidMolarRate);

diff --git a/...ompinterfacetension/ParachorFunction.java → ...ompinterfacetension/ParachorFunction.java b/...ompinterfacetension/ParachorFunction.java → ...ompinterfacetension/ParachorFunction.java
@@ -1,4 +1,4 @@
-package neqsim.physicalproperties.util.parameterFitting.pureComponentParameterFitting.purecompinterfacetension;
+package neqsim.physicalproperties.util.parameterfitting.purecomponentparameterfitting.purecompinterfacetension;
 
 import org.apache.logging.log4j.LogManager;
 import org.apache.logging.log4j.Logger;

diff --git a/...compinterfacetension/TestParachorFit.java → ...compinterfacetension/TestParachorFit.java b/...compinterfacetension/TestParachorFit.java → ...compinterfacetension/TestParachorFit.java
@@ -1,4 +1,4 @@
-package neqsim.physicalproperties.util.parameterFitting.pureComponentParameterFitting.purecompinterfacetension;
+package neqsim.physicalproperties.util.parameterfitting.purecomponentparameterfitting.purecompinterfacetension;
 
 import java.sql.ResultSet;
 import java.util.ArrayList;

diff --git a/...pviscosity/chungMethod/ChungFunction.java → ...pviscosity/chungmethod/ChungFunction.java b/...pviscosity/chungMethod/ChungFunction.java → ...pviscosity/chungmethod/ChungFunction.java
@@ -1,4 +1,4 @@
-package neqsim.physicalproperties.util.parameterFitting.pureComponentParameterFitting.purecompviscosity.chungMethod;
+package neqsim.physicalproperties.util.parameterfitting.purecomponentparameterfitting.purecompviscosity.chungMethod;
 
 import neqsim.statistics.parameterfitting.nonlinearparameterfitting.LevenbergMarquardtFunction;
 

diff --git a/...mpviscosity/chungMethod/TestChungFit.java → ...mpviscosity/chungmethod/TestChungFit.java b/...mpviscosity/chungMethod/TestChungFit.java → ...mpviscosity/chungmethod/TestChungFit.java
@@ -1,4 +1,4 @@
-package neqsim.physicalproperties.util.parameterFitting.pureComponentParameterFitting.purecompviscosity.chungMethod;
+package neqsim.physicalproperties.util.parameterfitting.purecomponentparameterfitting.purecompviscosity.chungMethod;
 
 import java.sql.ResultSet;
 import java.util.ArrayList;
@@ -37,11 +37,11 @@ public static void main(String[] args) {
 
     try (NeqSimDataBase database = new NeqSimDataBase();
         ResultSet dataSet = database.getResultSet("SELECT * FROM purecomponentviscosity") // WHERE
-                                                                                           // ComponentName='MDEA*'");
+                                                                                          // ComponentName='MDEA*'");
     ) {
       while (dataSet.next()) {
         ChungFunction function = new ChungFunction();
-        double guess[] = {0.3211};
+        double guess[] = { 0.3211 };
         function.setInitialGuess(guess);
 
         SystemInterface testSystem = new SystemSrkEos(280, 0.001);
@@ -50,8 +50,8 @@ public static void main(String[] args) {
         testSystem.createDatabase(true);
         testSystem.init(0);
         testSystem.setMixingRule(2);
-        double sample1[] = {Double.parseDouble(dataSet.getString("Temperature"))};
-        double standardDeviation1[] = {0.1};
+        double sample1[] = { Double.parseDouble(dataSet.getString("Temperature")) };
+        double standardDeviation1[] = { 0.1 };
         SampleValue sample = new SampleValue(Double.parseDouble(dataSet.getString("Viscosity")),
             0.001, sample1, standardDeviation1);
         sample.setFunction(function);

diff --git a/...y/linearLiquidModel/TestViscosityFit.java → ...y/linearliquidmodel/TestViscosityFit.java b/...y/linearLiquidModel/TestViscosityFit.java → ...y/linearliquidmodel/TestViscosityFit.java
@@ -1,4 +1,4 @@
-package neqsim.physicalproperties.util.parameterFitting.pureComponentParameterFitting.purecompviscosity.linearLiquidModel;
+package neqsim.physicalproperties.util.parameterfitting.purecomponentparameterfitting.purecompviscosity.linearliquidmodel;
 
 import java.sql.ResultSet;
 import java.util.ArrayList;
@@ -42,7 +42,7 @@ public static void main(String[] args) {
         ViscosityFunction function = new ViscosityFunction();
         // double guess[] = {-66.2, 11810, 0.1331, -0.0000983}; //mdea
         // double guess[] = {-5.771E1, 7.647E3, 1.442E-1, -1.357E-4}; //water
-        double guess[] = {-10.14, 3868.803, -0.00550507}; // ,0.000001}; //,0.001}; //MEG
+        double guess[] = { -10.14, 3868.803, -0.00550507 }; // ,0.000001}; //,0.001}; //MEG
         // double guess[] = { -53.92523097004079, 9741.992308,0,0.106066223998382};
         // //TEG
         function.setInitialGuess(guess);
@@ -55,8 +55,8 @@ public static void main(String[] args) {
         double temp = Double.parseDouble(dataSet.getString("Temperature"));
         testSystem.setTemperature(temp);
         testSystem.init(0);
-        double sample1[] = {temp};
-        double standardDeviation1[] = {0.1};
+        double sample1[] = { temp };
+        double standardDeviation1[] = { 0.1 };
         SampleValue sample = new SampleValue(Double.parseDouble(dataSet.getString("Viscosity")),
             Double.parseDouble(dataSet.getString("StdDev")), sample1, standardDeviation1);
         sample.setFunction(function);

diff --git a/.../linearLiquidModel/ViscosityFunction.java → .../linearliquidmodel/ViscosityFunction.java b/.../linearLiquidModel/ViscosityFunction.java → .../linearliquidmodel/ViscosityFunction.java
@@ -4,7 +4,7 @@
  * Created on 24. januar 2001, 23:30
  */
 
-package neqsim.physicalproperties.util.parameterFitting.pureComponentParameterFitting.purecompviscosity.linearLiquidModel;
+package neqsim.physicalproperties.util.parameterfitting.purecomponentparameterfitting.purecompviscosity.linearliquidmodel;
 
 import neqsim.statistics.parameterfitting.nonlinearparameterfitting.LevenbergMarquardtFunction;
 
@@ -22,7 +22,8 @@ public class ViscosityFunction extends LevenbergMarquardtFunction {
    * Constructor for ViscosityFunction.
    * </p>
    */
-  public ViscosityFunction() {}
+  public ViscosityFunction() {
+  }
 
   /** {@inheritDoc} */
   @Override

diff --git a/...ain/java/neqsim/processsimulation/mechanicaldesign/absorber/AbsorberMechanicalDesign.java b/...ain/java/neqsim/processsimulation/mechanicaldesign/absorber/AbsorberMechanicalDesign.java
@@ -7,7 +7,7 @@
 import neqsim.processsimulation.processequipment.absorber.SimpleTEGAbsorber;
 import neqsim.processsimulation.processequipment.separator.Separator;
 import neqsim.processsimulation.processequipment.separator.SeparatorInterface;
-import neqsim.processsimulation.processequipment.separator.sectionType.SeparatorSection;
+import neqsim.processsimulation.processequipment.separator.sectiontype.SeparatorSection;
 
 /**
  * <p>
@@ -30,8 +30,9 @@ public class AbsorberMechanicalDesign extends SeparatorMechanicalDesign {
    * Constructor for AbsorberMechanicalDesign.
    * </p>
    *
-   * @param equipment a {@link neqsim.processsimulation.processequipment.ProcessEquipmentInterface}
-   *        object
+   * @param equipment a
+   *                  {@link neqsim.processsimulation.processequipment.ProcessEquipmentInterface}
+   *                  object
    */
   public AbsorberMechanicalDesign(ProcessEquipmentInterface equipment) {
     super(equipment);
@@ -45,9 +46,8 @@ public void readDesignSpecifications() {
     if (getDesignStandard().containsKey("pressure vessel design code")) {
       System.out.println("pressure vessel code standard: "
           + getDesignStandard().get("pressure vessel design code").getStandardName());
-      wallThickness =
-          ((PressureVesselDesignStandard) getDesignStandard().get("pressure vessel design code"))
-              .calcWallThickness();
+      wallThickness = ((PressureVesselDesignStandard) getDesignStandard().get("pressure vessel design code"))
+          .calcWallThickness();
     } else {
       System.out.println("no pressure vessel code standard specified......");
       return;
@@ -65,12 +65,10 @@ public void readDesignSpecifications() {
     if (getDesignStandard().containsKey("separator process design")) {
       System.out.println("separator process design: "
           + getDesignStandard().get("separator process design").getStandardName());
-      gasLoadFactor =
-          ((SeparatorDesignStandard) getDesignStandard().get("separator process design"))
-              .getGasLoadFactor();
-      volumeSafetyFactor =
-          ((SeparatorDesignStandard) getDesignStandard().get("separator process design"))
-              .getVolumetricDesignFactor();
+      gasLoadFactor = ((SeparatorDesignStandard) getDesignStandard().get("separator process design"))
+          .getGasLoadFactor();
+      volumeSafetyFactor = ((SeparatorDesignStandard) getDesignStandard().get("separator process design"))
+          .getVolumetricDesignFactor();
     } else {
       System.out.println("no separator process design specified......");
     }
@@ -101,7 +99,7 @@ public void calcDesign() {
     double gasDensity = ((Separator) getProcessEquipment()).getGasOutStream().getThermoSystem()
         .getPhase(0).getPhysicalProperties().getDensity();
     double liqDensity = 1000.0; // ((SimpleTEGAbsorber)
-                               // getProcessEquipment()).getLiquidOutStream().getThermoSystem().getPhase(1).getPhysicalProperties().getDensity();
+                                // getProcessEquipment()).getLiquidOutStream().getThermoSystem().getPhase(1).getPhysicalProperties().getDensity();
 
     // maxDesignVolumeFlow = volumeSafetyFactor * ((Separator)
     // getProcessEquipment()).getThermoSystem().getPhase(0).getVolume() / 1e5;