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| @@ -0,0 +1,34 @@ | ||
| options(width = 10000) # do not hard-wrap formatted citations | ||
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| source("_automation/get_new_papers.R") | ||
| month_1st <- format(lubridate::floor_date(lubridate::today() - 1, "month")) | ||
| new_papers <- get_new_papers_team(from_date = month_1st) | ||
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| if (nrow(new_papers) > 0) { | ||
| bibentries_new <- create_bibentries(new_papers) | ||
| saveRDS(bibentries_new, paste0("bibentries_previous_month.rds")) | ||
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| bibentries_new_checklist <- paste( | ||
| "- [ ]", vapply(bibentries_new, format, character(1)) | ||
| ) | ||
| bibentries_comment <- paste( | ||
| c( | ||
| "Papers published last month:", | ||
| bibentries_new_checklist, | ||
| "<details>", | ||
| "", | ||
| "```", | ||
| vapply(bibentries_new, format, character(1), "bibtex"), | ||
| "```", | ||
| "</details>" | ||
| ), | ||
| collapse = "\n" | ||
| ) | ||
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| gh::gh( | ||
| "POST /repos/{gh_repo}/issues/{issue_number}/comments", | ||
| gh_repo = "${{ github.repository }}", | ||
| issue_number = 3, | ||
| body = bibentries_comment | ||
| ) | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,65 @@ | ||
| last_comment_pubs <- gh::gh( | ||
| "/repos/{gh_repo}/issues/{issue_number}/comments", | ||
| gh_repo = "${{ github.repository }}", | ||
| issue_number = 3, | ||
| .accept = "application/vnd.github.v3.full+json" | ||
| ) |> | ||
| purrr::keep(~ .x$user$login == "github-actions[bot]") |> | ||
| tail(1) |> | ||
| purrr::map_chr("body_html") |> | ||
| xml2::read_html() | ||
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| last_comment_pubs |> | ||
| xml2::xml_find_first("//details") |> | ||
| xml2::xml_text() |> | ||
| write("bibentries_previous_month.bib") | ||
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| bibentries_previous_month <- bibtex::read.bib("bibentries_previous_month.bib") | ||
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| selected <- last_comment_pubs |> | ||
| xml2::xml_find_first("//ul") |> | ||
| xml2::xml_find_all("//input") |> | ||
| xml2::xml_has_attr("checked") | ||
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| selected_bibentries <- bibentries_previous_month[selected] | ||
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| bib_new <- vapply(selected_bibentries, format, style = "Bibtex", character(1)) | ||
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| bib_old <- readLines("_data/papers.bib") | ||
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| bib <- paste(c(bib_old, bib_new), collapse = "\n") | ||
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| write(bib, "_data/papers.bib") | ||
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| ## filter latest version | ||
| df <- bib2df::bib2df("_data/papers.bib") |> | ||
| dplyr::mutate( | ||
| version = dplyr::if_else( | ||
| grepl("wellcomeopenres", DOI), | ||
| sub("^.*\\.([1-9][0-9]*)$", "\\1", DOI), | ||
| "1" | ||
| ), | ||
| base_doi = dplyr::if_else( | ||
| grepl("wellcomeopenres", DOI), | ||
| sub("\\.([1-9][0-9]*)$", "", DOI), | ||
| DOI | ||
| ) | ||
| ) |> | ||
| dplyr::group_by(base_doi) |> | ||
| dplyr::filter(version == max(version)) |> | ||
| dplyr::ungroup() |> | ||
| dplyr::select(-base_doi, -version) | ||
|
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| ## filter preprints | ||
| df <- df |> | ||
| dplyr::group_by(TITLE) |> | ||
| dplyr::mutate(n = dplyr::n()) |> | ||
| dplyr::mutate(id = seq_len(dplyr::n())) |> | ||
| dplyr::mutate(n_pp = sum(JOURNAL == "medRxiv")) |> | ||
| dplyr::filter( | ||
| !((n_pp < n) & (JOURNAL == "medRxiv")) | ||
| ) |> | ||
| dplyr::filter( | ||
| !(n > 1 & id < max(id)) | ||
| ) |> | ||
| dplyr::ungroup() |