Merge branch 'master' into seabbs/issue85

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: EpiSoon
 Type: Package
 Title: Forecast Cases Using Reproduction Numbers
-Version: 0.3.0
+Version: 0.3.0.1000
 Authors@R: c(
     person(given = "Sam Abbott",
            role = c("aut", "cre"),
@@ -69,22 +69,21 @@ Imports:
     cowplot,
     HDInterval,
     R.utils
-Additional_repositories: 
-    https://epiforecasts.io/drat/
 Remotes:
     nikosbosse/stackr
 Suggests: 
     knitr,
     rmarkdown,
+    fable,
     fabletools,
     tsibble,
     forecastHybrid,
     forecast,
     fable,
-    bsts,
     feasts,
     future.apply,
     stackr,
+    bsts,
     brms,
     tidybayes,
     testthat,

NEWS.md

@@ -1,7 +1,13 @@
+# EpiSoon 0.3.1
+
+* Updated all GitHub Actions
+* Updated `tidyverse` code usage to account for depreciation.
+* Updated `pkgdown` site to use `pkgdown` 2.0.0.
+
 # EpiSoon 0.3.0
 
 * Reviewed and updated all tooling and examples
-* Added documentation 
+* Added documentation
 * Bugs squashed.
 
 # EpiSoon 0.2.0

_pkgdown.yml

@@ -1,28 +1,22 @@
 url: epiforecasts.io/EpiSoon/
 template:
+  bootstrap: 5
+  opengraph:
+    twitter:
+      creator: "@seabbs"
+      site: "@epiforecasts"
+      card: summary_large_image
   params:
     bootswatch: lumen
 
 development:
-  mode: release
-
-navbar:
-  type: inverse 
-  left:
-    - text: "Home"
-      href: index.html
-    - text: "Getting started"
-      href: articles/introduction.html
-    - text: News
-      href: news/index.html
-    - icon: fa-file-code-o
-      text: "Functions"
-      href: reference/index.html
-  right:
-    - icon: fa-github
-      href: https://github.com/epiforecasts/EpiSoon
-
+  mode: auto
 
+authors:
+  Sam Abbott:
+    href: "https://www.samabbott.co.uk/"
+  Sebastian Funk: 
+    href: "https://www.lshtm.ac.uk/aboutus/people/funk.sebastian"
 
 reference:
   - title: Analysis wrappers
@@ -34,6 +28,7 @@ reference:
   - title: Forecast
     desc: Forecasting tools
     contents:
+      - forecast_model
       - forecast_rt
       - forecast_cases
       - forecast_cases_directly
@@ -69,6 +64,7 @@ reference:
     desc: Tools to plot forecasts
     contents:
       - plot_forecast
+      - plot_compare_timeseries
       - plot_forecast_evaluation
       - plot_scores
   - title: Example datasets

vignettes/introduction.Rmd

@@ -2,7 +2,7 @@
 title: "Getting started"
 output: rmarkdown::html_vignette
 vignette: >
-  %\VignetteIndexEntry{introduction}
+  %\VignetteIndexEntry{Getting started}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
 ---