update tests

epiforecasts · Nov 22, 2024 · ceb13e7 · ceb13e7
1 parent 5dc48de
commit ceb13e7
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Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/tests/testthat/test-estimate_infections.R b/tests/testthat/test-estimate_infections.R
@@ -66,7 +66,7 @@ test_that("estimate_infections successfully returns estimates when accumulating
   reported_cases_weekly <-
     reported_cases_weekly[seq(7, nrow(reported_cases_weekly), 7)]
   reported_cases_weekly <- fill_missing(
-    reported_cases_weekly, na = "accumulate", initial_accumulate = 7
+    reported_cases_weekly, missing_obs = "accumulate", initial_accumulate = 7
   )
   test_estimate_infections(reported_cases_weekly)
 })

diff --git a/tests/testthat/test-estimate_secondary.R b/tests/testthat/test-estimate_secondary.R
@@ -115,7 +115,9 @@ test_that("estimate_secondary successfully returns estimates when accumulating t
   cases_weekly <- merge(
     cases[, list(date, primary)], secondary_weekly, by = "date", all.x = TRUE
   )
-  cases_weekly <- fill_missing(cases_weekly, na = "accumulate")
+  cases_weekly <- fill_missing(
+    cases_weekly, missing_obs = "accumulate", obs_column = "secondary"
+  )
   inc_weekly <- estimate_secondary(cases_weekly,
     delays = delay_opts(
       LogNormal(