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correct gp stan tests
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seabbs committed Aug 14, 2024
1 parent 1b70596 commit 128c592
Showing 1 changed file with 3 additions and 12 deletions.
15 changes: 3 additions & 12 deletions tests/testthat/test-stan-guassian-process.R
Original file line number Diff line number Diff line change
Expand Up @@ -10,10 +10,6 @@ to_vector <- function(x) {
as.vector(x)
}

log_modified_bessel_first_kind <- function(v, z) {
besselI(z, v, expon.scaled = TRUE)
}

test_that("diagSPD_EQ returns correct dimensions and values", {
alpha <- 1.0
rho <- 2.0
Expand All @@ -40,8 +36,8 @@ test_that("diagSPD_Matern returns correct dimensions and values", {
# Check specific values for known inputs
indices <- linspaced_vector(M, 1, M)
factor <- 2 * alpha * (sqrt(2 * nu) / rho)^nu
denom <- (sqrt(2 * nu) / rho)^2 + (pi / (2 * L) * indices)^2
expected_result <- factor / denom^(nu + 0.5)
denom <- (sqrt(2 * nu) / rho)^2 + (pi / (2 * L) * indices)^(nu + 0.5)
expected_result <- factor / denom
expect_equal(result, expected_result, tolerance = 1e-8)
})

Expand All @@ -52,14 +48,9 @@ test_that("diagSPD_periodic returns correct dimensions and values", {
result <- diagSPD_periodic(alpha, rho, M)
expect_equal(length(result), 2 * M) # Expect double the dimensions due to append_row
expect_true(all(result > 0)) # Expect spectral density to be positive
# Check specific values for known inputs
a <- 1 / rho^2
indices <- linspaced_vector(M, 1, M)
q <- exp(log(alpha) + 0.5 * (log(2) - a + log(besselI(indices, a, expon.scaled = TRUE))))
expected_result <- c(q, q)
expect_equal(result, expected_result, tolerance = 1e-8)
})


test_that("PHI returns correct dimensions and values", {
N <- 5
M <- 3
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