Add support for missing NAs in estimate_infection() model #390
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| name: lint-changed-files | |
| jobs: | |
| lint-changed-files: | |
| runs-on: ubuntu-latest | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::gh | |
| any::lintr | |
| any::purrr | |
| needs: check | |
| - name: Add lintr options | |
| run: | | |
| cat('\noptions(lintr.linter_file = ".lintr")\n', file = "~/.Rprofile", append = TRUE) | |
| shell: Rscript {0} | |
| - name: Install package | |
| run: R CMD INSTALL . | |
| - name: Extract and lint files changed by this PR | |
| run: | | |
| files <- gh::gh("GET https://api.github.com/repos/${{ github.repository }}/pulls/${{ github.event.pull_request.number }}/files") | |
| changed_files <- purrr::map_chr(files, "filename") | |
| all_files <- list.files(recursive = TRUE) | |
| exclusions_list <- as.list(setdiff(all_files, changed_files)) | |
| lintr::lint_package(exclusions = exclusions_list) | |
| shell: Rscript {0} | |
| env: | |
| LINTR_ERROR_ON_LINT: true |