Include pre and final versions of clintrial-conformance-9

src/final-JATS-schematron.sch

@@ -2132,7 +2132,10 @@
 
       <assert see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-8" test="matches(@id,'^abs[1-9]$')" role="error" id="clintrial-conformance-8">[clintrial-conformance-8] <name/> must have an @id in the format 'abs1'. <value-of select="@id"/> does not conform to this convention.</assert>
 
-      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" role="error" id="clintrial-conformance-9">[clintrial-conformance-9] A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
+      <!-- temporarily doing pre and final versions -->
+
+
+      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" role="error" id="final-clintrial-conformance-9">[final-clintrial-conformance-9] A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
     </rule></pattern><pattern id="abstract-sec-title-content-pattern"><rule context="abstract[not(@abstract-type)]/sec/title" id="abstract-sec-title-content">
 
       <report test="*" role="error" id="struct-abs-title-1">[struct-abs-title-1] A title in a structured abstract cannot contain a child element. It should only contain text. This title with the content '<value-of select="."/>' has the following element(s): <value-of select="string-join(*/name(),'; ')"/>.</report>

src/final-JATS-schematron.xsl

@@ -11018,13 +11018,13 @@
 		    <!--REPORT error-->
       <xsl:if test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])">
          <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])">
-            <xsl:attribute name="id">clintrial-conformance-9</xsl:attribute>
+            <xsl:attribute name="id">final-clintrial-conformance-9</xsl:attribute>
             <xsl:attribute name="see">https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5</xsl:attribute>
             <xsl:attribute name="role">error</xsl:attribute>
             <xsl:attribute name="location">
                <xsl:apply-templates select="." mode="schematron-select-full-path"/>
             </xsl:attribute>
-            <svrl:text>[clintrial-conformance-9] A section with the title <xsl:text/>
+            <svrl:text>[final-clintrial-conformance-9] A section with the title <xsl:text/>
                <xsl:value-of select="title"/>
                <xsl:text/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</svrl:text>
          </svrl:successful-report>

src/final-package-JATS-schematron.sch

@@ -2138,7 +2138,10 @@
 
       <assert see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-8" test="matches(@id,'^abs[1-9]$')" role="error" id="clintrial-conformance-8"><name/> must have an @id in the format 'abs1'. <value-of select="@id"/> does not conform to this convention.</assert>
 
-      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" role="error" id="clintrial-conformance-9">A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
+      <!-- temporarily doing pre and final versions -->
+
+
+      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" role="error" id="final-clintrial-conformance-9">A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
     </rule></pattern><pattern id="abstract-sec-title-content-pattern"><rule context="abstract[not(@abstract-type)]/sec/title" id="abstract-sec-title-content">
 
       <report test="*" role="error" id="struct-abs-title-1">A title in a structured abstract cannot contain a child element. It should only contain text. This title with the content '<value-of select="."/>' has the following element(s): <value-of select="string-join(*/name(),'; ')"/>.</report>

src/pre-JATS-schematron.sch

@@ -2077,7 +2077,10 @@
 
       <assert see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-8" test="matches(@id,'^abs[1-9]$')" role="error" id="clintrial-conformance-8">[clintrial-conformance-8] <name/> must have an @id in the format 'abs1'. <value-of select="@id"/> does not conform to this convention.</assert>
 
-      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" role="error" id="clintrial-conformance-9">[clintrial-conformance-9] A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
+      <!-- temporarily doing pre and final versions -->
+      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" role="warning" id="pre-clintrial-conformance-9">[pre-clintrial-conformance-9] A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
+
+
     </rule></pattern><pattern id="abstract-sec-title-content-pattern"><rule context="abstract[not(@abstract-type)]/sec/title" id="abstract-sec-title-content">
 
       <report test="*" role="error" id="struct-abs-title-1">[struct-abs-title-1] A title in a structured abstract cannot contain a child element. It should only contain text. This title with the content '<value-of select="."/>' has the following element(s): <value-of select="string-join(*/name(),'; ')"/>.</report>

src/pre-JATS-schematron.xsl

@@ -10902,16 +10902,16 @@
          </xsl:otherwise>
       </xsl:choose>
 
-		    <!--REPORT error-->
+		    <!--REPORT warning-->
       <xsl:if test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])">
          <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])">
-            <xsl:attribute name="id">clintrial-conformance-9</xsl:attribute>
+            <xsl:attribute name="id">pre-clintrial-conformance-9</xsl:attribute>
             <xsl:attribute name="see">https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5</xsl:attribute>
-            <xsl:attribute name="role">error</xsl:attribute>
+            <xsl:attribute name="role">warning</xsl:attribute>
             <xsl:attribute name="location">
                <xsl:apply-templates select="." mode="schematron-select-full-path"/>
             </xsl:attribute>
-            <svrl:text>[clintrial-conformance-9] A section with the title <xsl:text/>
+            <svrl:text>[pre-clintrial-conformance-9] A section with the title <xsl:text/>
                <xsl:value-of select="title"/>
                <xsl:text/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</svrl:text>
          </svrl:successful-report>

src/schematron.sch

@@ -2984,10 +2984,16 @@
         role="error" 
         id="clintrial-conformance-8"><name/> must have an @id in the format 'abs1'. <value-of select="@id"/> does not conform to this convention.</assert>
 
+      <!-- temporarily doing pre and final versions -->
+      <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5"
+        test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" 
+        role="warning" 
+        id="pre-clintrial-conformance-9">A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
+
       <report see="https://elifeproduction.slab.com/posts/abstracts-digests-and-impact-statements-tiau2k6x#clintrial-conformance-5"
         test="starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])" 
         role="error" 
-        id="clintrial-conformance-9">A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
+        id="final-clintrial-conformance-9">A section with the title <value-of select="title"/> in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not.</report>
     </rule>
 
     <rule context="abstract[not(@abstract-type)]/sec/title" id="abstract-sec-title-content">

test/tests/gen/abstract-sec-titles/final-clintrial-conformance-9/fail.xml

@@ -0,0 +1,29 @@
+<?oxygen SCHSchema="final-clintrial-conformance-9.sch"?>
+<!--Context: abstract[not(@abstract-type)]/sec
+Test: report    starts-with(lower-case(title),'clinical trial number') and not(descendant::related-object[@document-id-type='clinical-trial-number'])
+Message: A section with the title  in the abstract must have at least one related-object element that contains all the information related to the clinical trial. This one does not. -->
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/">
+  <article>
+    <abstract>
+      <sec id="abs1">
+        <title>Background:</title>
+      </sec>
+      <sec id="abs2">
+        <title>Methods:</title>
+      </sec>
+      <sec id="abs3">
+        <title>Results:</title>
+      </sec>
+      <sec id="abs4">
+        <title>Conclusions:</title>
+      </sec>
+      <sec id="abs5">
+        <title>Funding:</title>
+      </sec>
+      <sec id="abs6">
+        <title>Clinical trial number:</title>
+        <p><ext-link ext-link-type="uri" xlink:href="https://clinicaltrials.gov/">https://clinicaltrials.gov/</ext-link> (CTN1234567890).</p>
+      </sec>
+    </abstract>
+  </article>
+</root>