RP - populate test cases

elifesciences · Dec 2, 2024 · ad0ca4d · ad0ca4d
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Showing 16 changed files with 196 additions and 16 deletions.
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-1/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-1/fail.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eproduced from')
 Message: The caption for  contains the text 'reproduced from', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Reproduced from Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-1/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-1/pass.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eproduced from')
 Message: The caption for  contains the text 'reproduced from', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>See Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-2/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-2/fail.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eproduced [Ww]ith [Pp]ermission')
 Message: The caption for  contains the text 'reproduced with permission', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Reproduced with permission from Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-2/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-2/pass.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eproduced [Ww]ith [Pp]ermission')
 Message: The caption for  contains the text 'reproduced with permission', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-3/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-3/fail.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Aa]dapted from|[Aa]dapted with')
 Message: The caption for  contains the text 'adapted from ...', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Adapted from Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-3/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-3/pass.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Aa]dapted from|[Aa]dapted with')
 Message: The caption for  contains the text 'adapted from ...', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-4/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-4/fail.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eprinted from')
 Message: The caption for  contains the text 'reprinted from', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Reprinted from Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-4/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-4/pass.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eprinted from')
 Message: The caption for  contains the text 'reprinted from', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-5/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-5/fail.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eprinted [Ww]ith [Pp]ermission')
 Message: The caption for  contains the text 'reprinted with permission', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Reprinted with permission from Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-5/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-5/pass.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Rr]eprinted [Ww]ith [Pp]ermission')
 Message: The caption for  contains the text 'reprinted with permission', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-6/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-6/fail.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Mm]odified from')
 Message: The caption for  contains the text 'modified from', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Modified from Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-6/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-6/pass.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Mm]odified from')
 Message: The caption for  contains the text 'modified from', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-7/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-7/fail.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Mm]odified [Ww]ith')
 Message: The caption for  contains the text 'modified with', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Modified with permish from Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-7/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-7/pass.xml
@@ -2,4 +2,16 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Mm]odified [Ww]ith')
 Message: The caption for  contains the text 'modified with', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <body>
+      <fig id="fig1">
+        <label>Figure 1.</label>
+        <caption>
+          <title>Title.</title>
+          <p>Smith et al., 19992</p>
+        </caption>
+      </fig>
+    </body>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-8/fail.xml b/test/tests/rp/fig-permissions-check/reproduce-test-8/fail.xml
@@ -2,4 +2,10 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Uu]sed [Ww]ith [Pp]ermission')
 Message: The caption for  contains the text 'used with permission', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <fig>
+      <caption>Panel (<bold>B</bold>) is used with permission from Drs. McCarroll and Krienen (<ext-link ext-link-type="uri" xlink:href="http://interneuron.mccarrolllab.org/">http://interneuron.mccarrolllab.org/)</ext-link>.</caption>
+    </fig>
+  </article>
+</root>
diff --git a/test/tests/rp/fig-permissions-check/reproduce-test-8/pass.xml b/test/tests/rp/fig-permissions-check/reproduce-test-8/pass.xml
@@ -2,4 +2,10 @@
 <!--Context: fig[not(descendant::permissions)]|media[@mimetype='video' and not(descendant::permissions)]|table-wrap[not(descendant::permissions)]|supplementary-material[not(descendant::permissions)]
 Test: report    matches(caption[1],'[Uu]sed [Ww]ith [Pp]ermission')
 Message: The caption for  contains the text 'used with permission', but has no permissions. Is this correct? -->
-<root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"><article/></root>
+<root xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/">
+  <article><front><journal-meta><journal-id>eLife</journal-id></journal-meta></front>
+    <fig>
+      <caption>Panel (<bold>B</bold>) is a gift from Drs. McCarroll and Krienen (<ext-link ext-link-type="uri" xlink:href="http://interneuron.mccarrolllab.org/">http://interneuron.mccarrolllab.org/)</ext-link>.</caption>
+    </fig>
+  </article>
+</root>