actually update schematron files

elifesciences · Sep 26, 2023 · 77d975d · 77d975d
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commit 77d975d
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Showing 7 changed files with 106,252 additions and 35,424 deletions.
diff --git a/src/final-JATS-schematron.sch b/src/final-JATS-schematron.sch
@@ -8620,7 +8620,7 @@
       <let name="funding-group" value="distinct-values(ancestor::article//funding-group//institution-id)"/>
       <let name="funders" value="'funders.xml'"/>
 
-      <report see="https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder,' ')) or contains($ack,concat(' ',$funder,'.'))) and not($funder/@fundref = $funding-group))" role="warning" id="fundref-test-1">[fundref-test-1] Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',.,' ')) or contains($ack,concat(' ',.,'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>.</report>
+      <report see="https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder/*:name,' ')) or contains($ack,concat(' ',$funder/*:name,'.'))) and not($funder/@fundref = $funding-group))" role="warning" id="fundref-test-1">[fundref-test-1] Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',*:name[1],' ')) or contains($ack,concat(' ',*:name[1],'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>.</report>
     </rule>
   </pattern>
 

diff --git a/src/final-JATS-schematron.xsl b/src/final-JATS-schematron.xsl
@@ -43009,16 +43009,16 @@
       <xsl:variable name="funders" select="'funders.xml'"/>
 
 		    <!--REPORT warning-->
-      <xsl:if test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder,' ')) or contains($ack,concat(' ',$funder,'.'))) and not($funder/@fundref = $funding-group))">
-         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder,' ')) or contains($ack,concat(' ',$funder,'.'))) and not($funder/@fundref = $funding-group))">
+      <xsl:if test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder/*:name,' ')) or contains($ack,concat(' ',$funder/*:name,'.'))) and not($funder/@fundref = $funding-group))">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder/*:name,' ')) or contains($ack,concat(' ',$funder/*:name,'.'))) and not($funder/@fundref = $funding-group))">
             <xsl:attribute name="id">fundref-test-1</xsl:attribute>
             <xsl:attribute name="see">https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1</xsl:attribute>
             <xsl:attribute name="role">warning</xsl:attribute>
             <xsl:attribute name="location">
                <xsl:apply-templates select="." mode="schematron-select-full-path"/>
             </xsl:attribute>
             <svrl:text>[fundref-test-1] Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <xsl:text/>
-               <xsl:value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',.,' ')) or contains($ack,concat(' ',.,'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>
+               <xsl:value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',*:name[1],' ')) or contains($ack,concat(' ',*:name[1],'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>
                <xsl:text/>.</svrl:text>
          </svrl:successful-report>
       </xsl:if>

diff --git a/src/final-package-JATS-schematron.sch b/src/final-package-JATS-schematron.sch
@@ -9071,7 +9071,7 @@
       <let name="funding-group" value="distinct-values(ancestor::article//funding-group//institution-id)"/>
       <let name="funders" value="'funders.xml'"/>
 
-      <report see="https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder,' ')) or contains($ack,concat(' ',$funder,'.'))) and not($funder/@fundref = $funding-group))" role="warning" id="fundref-test-1">Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',.,' ')) or contains($ack,concat(' ',.,'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>.</report>
+      <report see="https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder/*:name,' ')) or contains($ack,concat(' ',$funder/*:name,'.'))) and not($funder/@fundref = $funding-group))" role="warning" id="fundref-test-1">Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',*:name[1],' ')) or contains($ack,concat(' ',*:name[1],'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>.</report>
     </rule>
   </pattern>
 

diff --git a/src/pre-JATS-schematron.sch b/src/pre-JATS-schematron.sch
@@ -8545,7 +8545,7 @@
       <let name="funding-group" value="distinct-values(ancestor::article//funding-group//institution-id)"/>
       <let name="funders" value="'funders.xml'"/>
 
-      <report see="https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder,' ')) or contains($ack,concat(' ',$funder,'.'))) and not($funder/@fundref = $funding-group))" role="warning" id="fundref-test-1">[fundref-test-1] Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',.,' ')) or contains($ack,concat(' ',.,'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>.</report>
+      <report see="https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder/*:name,' ')) or contains($ack,concat(' ',$funder/*:name,'.'))) and not($funder/@fundref = $funding-group))" role="warning" id="fundref-test-1">[fundref-test-1] Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',*:name[1],' ')) or contains($ack,concat(' ',*:name[1],'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>.</report>
     </rule>
   </pattern>
 

diff --git a/src/pre-JATS-schematron.xsl b/src/pre-JATS-schematron.xsl
@@ -42901,16 +42901,16 @@
       <xsl:variable name="funders" select="'funders.xml'"/>
 
 		    <!--REPORT warning-->
-      <xsl:if test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder,' ')) or contains($ack,concat(' ',$funder,'.'))) and not($funder/@fundref = $funding-group))">
-         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder,' ')) or contains($ack,concat(' ',$funder,'.'))) and not($funder/@fundref = $funding-group))">
+      <xsl:if test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder/*:name,' ')) or contains($ack,concat(' ',$funder/*:name,'.'))) and not($funder/@fundref = $funding-group))">
+         <svrl:successful-report xmlns:svrl="http://purl.oclc.org/dsdl/svrl" test="some $funder in document($funders)//funder satisfies ((contains($ack,concat(' ',$funder/*:name,' ')) or contains($ack,concat(' ',$funder/*:name,'.'))) and not($funder/@fundref = $funding-group))">
             <xsl:attribute name="id">fundref-test-1</xsl:attribute>
             <xsl:attribute name="see">https://elifeproduction.slab.com/posts/funding-3sv64358#h10qd-fundref-test-1</xsl:attribute>
             <xsl:attribute name="role">warning</xsl:attribute>
             <xsl:attribute name="location">
                <xsl:apply-templates select="." mode="schematron-select-full-path"/>
             </xsl:attribute>
             <svrl:text>[fundref-test-1] Acknowledgements contains funder(s) in the open funder registry, but their doi is not listed in the funding section. Please check - <xsl:text/>
-               <xsl:value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',.,' ')) or contains($ack,concat(' ',.,'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>
+               <xsl:value-of select="string-join(for $x in document($funders)//funder[((contains($ack,concat(' ',*:name[1],' ')) or contains($ack,concat(' ',*:name[1],'.'))) and not(@fundref = $funding-group))] return concat($x,' - ',$x/@fundref),'; ')"/>
                <xsl:text/>.</svrl:text>
          </svrl:successful-report>
       </xsl:if>