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Merge pull request #749 from elifesciences/pr-749
RP - check rp version against preprint version
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159
test/tests/rp/rp-and-preprint-version-checks/article-version-12/article-version-12.sch
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|---|---|---|
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| <schema xmlns="http://purl.oclc.org/dsdl/schematron" xmlns:meca="http://manuscriptexchange.org" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:file="java.io.File" xmlns:java="http://www.java.com/" xmlns:xsl="http://www.w3.org/1999/XSL/Transform" xmlns:xlink="http://www.w3.org/1999/xlink" queryBinding="xslt2"> | ||
| <title>eLife reviewed preprint schematron</title> | ||
| <ns uri="http://www.niso.org/schemas/ali/1.0/" prefix="ali"/> | ||
| <ns uri="http://www.w3.org/XML/1998/namespace" prefix="xml"/> | ||
| <ns uri="http://www.w3.org/1999/xlink" prefix="xlink"/> | ||
| <ns uri="http://www.w3.org/2001/XInclude" prefix="xi"/> | ||
| <ns uri="http://www.w3.org/1998/Math/MathML" prefix="mml"/> | ||
| <ns uri="http://saxon.sf.net/" prefix="saxon"/> | ||
| <ns uri="http://purl.org/dc/terms/" prefix="dc"/> | ||
| <ns uri="http://www.w3.org/2001/XMLSchema" prefix="xs"/> | ||
| <ns uri="https://elifesciences.org/namespace" prefix="e"/> | ||
| <ns uri="java.io.File" prefix="file"/> | ||
| <ns uri="http://www.java.com/" prefix="java"/> | ||
| <ns uri="http://manuscriptexchange.org" prefix="meca"/> | ||
| <xsl:function name="e:isbn-sum" as="xs:integer"> | ||
| <xsl:param name="s" as="xs:string"/> | ||
| <xsl:choose> | ||
| <xsl:when test="string-length($s) = 10"> | ||
| <xsl:variable name="d1" select="number(substring($s,1,1)) * 10"/> | ||
| <xsl:variable name="d2" select="number(substring($s,2,1)) * 9"/> | ||
| <xsl:variable name="d3" select="number(substring($s,3,1)) * 8"/> | ||
| <xsl:variable name="d4" select="number(substring($s,4,1)) * 7"/> | ||
| <xsl:variable name="d5" select="number(substring($s,5,1)) * 6"/> | ||
| <xsl:variable name="d6" select="number(substring($s,6,1)) * 5"/> | ||
| <xsl:variable name="d7" select="number(substring($s,7,1)) * 4"/> | ||
| <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/> | ||
| <xsl:variable name="d9" select="number(substring($s,9,1)) * 2"/> | ||
| <xsl:variable name="d10" select="number(substring($s,10,1)) * 1"/> | ||
| <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10) mod 11"/> | ||
| </xsl:when> | ||
| <xsl:when test="string-length($s) = 13"> | ||
| <xsl:variable name="d1" select="number(substring($s,1,1))"/> | ||
| <xsl:variable name="d2" select="number(substring($s,2,1)) * 3"/> | ||
| <xsl:variable name="d3" select="number(substring($s,3,1))"/> | ||
| <xsl:variable name="d4" select="number(substring($s,4,1)) * 3"/> | ||
| <xsl:variable name="d5" select="number(substring($s,5,1))"/> | ||
| <xsl:variable name="d6" select="number(substring($s,6,1)) * 3"/> | ||
| <xsl:variable name="d7" select="number(substring($s,7,1))"/> | ||
| <xsl:variable name="d8" select="number(substring($s,8,1)) * 3"/> | ||
| <xsl:variable name="d9" select="number(substring($s,9,1))"/> | ||
| <xsl:variable name="d10" select="number(substring($s,10,1)) * 3"/> | ||
| <xsl:variable name="d11" select="number(substring($s,11,1))"/> | ||
| <xsl:variable name="d12" select="number(substring($s,12,1)) * 3"/> | ||
| <xsl:variable name="d13" select="number(substring($s,13,1))"/> | ||
| <xsl:value-of select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7 + $d8 + $d9 + $d10 + $d11 + $d12 + $d13) mod 10"/> | ||
| </xsl:when> | ||
| <xsl:otherwise> | ||
| <xsl:value-of select="number('1')"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:function> | ||
| <xsl:function name="e:is-valid-issn" as="xs:boolean"> | ||
| <xsl:param name="s" as="xs:string"/> | ||
| <xsl:choose> | ||
| <xsl:when test="not(matches($s,'^\d{4}\-\d{3}[\dX]$'))"> | ||
| <xsl:value-of select="false()"/> | ||
| </xsl:when> | ||
| <xsl:otherwise> | ||
| <xsl:variable name="d1" select="number(substring($s,1,1)) * 8"/> | ||
| <xsl:variable name="d2" select="number(substring($s,2,1)) * 7"/> | ||
| <xsl:variable name="d3" select="number(substring($s,3,1)) * 6"/> | ||
| <xsl:variable name="d4" select="number(substring($s,4,1)) * 5"/> | ||
| <xsl:variable name="d5" select="number(substring($s,6,1)) * 4"/> | ||
| <xsl:variable name="d6" select="number(substring($s,7,1)) * 3"/> | ||
| <xsl:variable name="d7" select="number(substring($s,8,1)) * 2"/> | ||
| <xsl:variable name="remainder" select="number($d1 + $d2 + $d3 + $d4 + $d5 + $d6 + $d7) mod 11"/> | ||
| <xsl:variable name="calc" select="if ($remainder=0) then 0 else (11 - $remainder)"/> | ||
| <xsl:variable name="check" select="if (substring($s,9,1)='X') then 10 else number(substring($s,9,1))"/> | ||
| <xsl:value-of select="$calc = $check"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:function> | ||
| <xsl:function name="e:get-name" as="xs:string"> | ||
| <xsl:param name="name"/> | ||
| <xsl:choose> | ||
| <xsl:when test="$name/given-names[1] and $name/surname[1] and $name/suffix[1]"> | ||
| <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1],' ',$name/suffix[1])"/> | ||
| </xsl:when> | ||
| <xsl:when test="not($name/given-names[1]) and $name/surname[1] and $name/suffix[1]"> | ||
| <xsl:value-of select="concat($name/surname[1],' ',$name/suffix[1])"/> | ||
| </xsl:when> | ||
| <xsl:when test="$name/given-names[1] and $name/surname[1] and not($name/suffix[1])"> | ||
| <xsl:value-of select="concat($name/given-names[1],' ',$name/surname[1])"/> | ||
| </xsl:when> | ||
| <xsl:when test="not($name/given-names[1]) and $name/surname[1] and not($name/suffix[1])"> | ||
| <xsl:value-of select="$name/surname[1]"/> | ||
| </xsl:when> | ||
| <xsl:otherwise> | ||
| <xsl:value-of select="'No elements present'"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:function> | ||
| <xsl:function name="e:get-copyright-holder"> | ||
| <xsl:param name="contrib-group"/> | ||
| <xsl:variable name="author-count" select="count($contrib-group/contrib[@contrib-type='author'])"/> | ||
| <xsl:choose> | ||
| <xsl:when test="$author-count lt 1"/> | ||
| <xsl:when test="$author-count = 1"> | ||
| <xsl:choose> | ||
| <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab"> | ||
| <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1]"/> | ||
| </xsl:when> | ||
| <xsl:otherwise> | ||
| <xsl:value-of select="$contrib-group/contrib[@contrib-type='author']/name[1]/surname[1]"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:when> | ||
| <xsl:when test="$author-count = 2"> | ||
| <xsl:choose> | ||
| <xsl:when test="$contrib-group/contrib[@contrib-type='author']/collab"> | ||
| <xsl:choose> | ||
| <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab and $contrib-group/contrib[@contrib-type='author'][2]/collab"> | ||
| <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author']/collab[1]/text()[1],' & ',$contrib-group/contrib[@contrib-type='author']/collab[2]/text()[1])"/> | ||
| </xsl:when> | ||
| <xsl:when test="$contrib-group/contrib[@contrib-type='author'][1]/collab"> | ||
| <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/collab[1]/text()[1],' & ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/> | ||
| </xsl:when> | ||
| <xsl:otherwise> | ||
| <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' & ',$contrib-group/contrib[@contrib-type='author'][2]/collab[1]/text()[1])"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:when> | ||
| <xsl:otherwise> | ||
| <xsl:value-of select="concat($contrib-group/contrib[@contrib-type='author'][1]/name[1]/surname[1],' & ',$contrib-group/contrib[@contrib-type='author'][2]/name[1]/surname[1])"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:when> | ||
|
|
||
| <xsl:otherwise> | ||
| <xsl:variable name="is-equal-contrib" select="if ($contrib-group/contrib[@contrib-type='author'][1]/@equal-contrib='yes') then true() else false()"/> | ||
|
|
||
| <xsl:value-of select="concat(e:get-surname($contrib-group/contrib[@contrib-type='author'][1]),' et al')"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:function> | ||
| <xsl:function name="e:get-surname" as="text()"> | ||
| <xsl:param name="contrib"/> | ||
| <xsl:choose> | ||
| <xsl:when test="$contrib/collab"> | ||
| <xsl:value-of select="$contrib/collab[1]/text()[1]"/> | ||
| </xsl:when> | ||
| <xsl:otherwise> | ||
| <xsl:value-of select="$contrib//name[1]/surname[1]"/> | ||
| </xsl:otherwise> | ||
| </xsl:choose> | ||
| </xsl:function> | ||
| <pattern id="rp-and-preprint-version-checks-pattern"> | ||
| <rule context="article/front[journal-meta/journal-id='elife']/article-meta[matches(replace(article-id[@specific-use='version'][1],'^.*\.',''),'^\d\d?$') and matches(descendant::article-version[@article-version-type='preprint-version'][1],'^1\.\d+$')]" id="rp-and-preprint-version-checks"> | ||
| <let name="preprint-version" value="number(substring-after(descendant::article-version[@article-version-type='preprint-version'][1],'.'))"/> | ||
| <let name="rp-version" value="number(replace(article-id[@specific-use='version'][1],'^.*\.',''))"/> | ||
| <assert test="$rp-version le $preprint-version" role="error" id="article-version-12">[article-version-12] This is Reviewed Preprint version <value-of select="$rp-version"/>, but according to the article-version, it's based on preprint version <value-of select="$preprint-version"/>. This cannot be correct.</assert> | ||
| </rule> | ||
| </pattern> | ||
| <pattern id="root-pattern"> | ||
| <rule context="root" id="root-rule"> | ||
| <assert test="descendant::article/front[journal-meta/journal-id='elife']/article-meta[matches(replace(article-id[@specific-use='version'][1],'^.*\.',''),'^\d\d?$') and matches(descendant::article-version[@article-version-type='preprint-version'][1],'^1\.\d+$')]" role="error" id="rp-and-preprint-version-checks-xspec-assert">article/front[journal-meta/journal-id='elife']/article-meta[matches(replace(article-id[@specific-use='version'][1],'^.*\.',''),'^\d\d?$') and matches(descendant::article-version[@article-version-type='preprint-version'][1],'^1\.\d+$')] must be present.</assert> | ||
| </rule> | ||
| </pattern> | ||
| </schema> |
20 changes: 20 additions & 0 deletions
20
test/tests/rp/rp-and-preprint-version-checks/article-version-12/fail.xml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| <?oxygen SCHSchema="article-version-12.sch"?> | ||
| <!--Context: article/front[journal-meta/journal-id='elife']/article-meta[matches(replace(article-id[@specific-use='version'][1],'^.*\.',''),'^\d\d?$') and matches(descendant::article-version[@article-version-type='preprint-version'][1],'^1\.\d+$')] | ||
| Test: assert $rp-version le $preprint-version | ||
| Message: This is Reviewed Preprint version , but according to the article-version, it's based on preprint version . This cannot be correct. --> | ||
| <root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> | ||
| <article> | ||
| <front> | ||
| <journal-meta> | ||
| <journal-id journal-id-type="nlm-ta">elife</journal-id> | ||
| </journal-meta> | ||
| <article-meta> | ||
| <article-id pub-id-type="doi" specific-use="version">10.7554/eLife.1234321.2</article-id> | ||
| <article-version-alternatives> | ||
| <article-version article-version-type="publication-state">reviewed preprint</article-version> | ||
| <article-version article-version-type="preprint-version">1.1</article-version> | ||
| </article-version-alternatives> | ||
| </article-meta> | ||
| </front> | ||
| </article> | ||
| </root> |
20 changes: 20 additions & 0 deletions
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test/tests/rp/rp-and-preprint-version-checks/article-version-12/pass.xml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| <?oxygen SCHSchema="article-version-12.sch"?> | ||
| <!--Context: article/front[journal-meta/journal-id='elife']/article-meta[matches(replace(article-id[@specific-use='version'][1],'^.*\.',''),'^\d\d?$') and matches(descendant::article-version[@article-version-type='preprint-version'][1],'^1\.\d+$')] | ||
| Test: assert $rp-version le $preprint-version | ||
| Message: This is Reviewed Preprint version , but according to the article-version, it's based on preprint version . This cannot be correct. --> | ||
| <root xmlns:ali="http://www.niso.org/schemas/ali/1.0/" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> | ||
| <article> | ||
| <front> | ||
| <journal-meta> | ||
| <journal-id journal-id-type="nlm-ta">elife</journal-id> | ||
| </journal-meta> | ||
| <article-meta> | ||
| <article-id pub-id-type="doi" specific-use="version">10.7554/eLife.1234321.2</article-id> | ||
| <article-version-alternatives> | ||
| <article-version article-version-type="publication-state">reviewed preprint</article-version> | ||
| <article-version article-version-type="preprint-version">1.2</article-version> | ||
| </article-version-alternatives> | ||
| </article-meta> | ||
| </front> | ||
| </article> | ||
| </root> |
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