Merge pull request #22 from ecohealthalliance/dev #3

	on:
	workflow_dispatch:
	push:
	branches: main

	name: Quarto Publish

	jobs:
	build-deploy:
	runs-on: ubuntu-latest
	permissions:
	contents: write
	env:
	GIT_CRYPT_KEY64: ${{ secrets.GIT_CRYPT_KEY64 }}
	steps:
	- name: Check out repository
	uses: actions/checkout@v4

	- name: Install system dependencies
	run: \|
	sudo apt-get update && apt-get install -y --no-install-recommends \
	git-crypt

	- name: Trust git repo
	run: \|
	git config --global --add safe.directory /__w/acdc-db-handbook/acdc-db-handbook

	- name: Decrypt repository using symmetric key
	run: \|
	echo $GIT_CRYPT_KEY64 > git_crypt_key.key64 && base64 -di git_crypt_key.key64 > git_crypt_key.key && git-crypt unlock git_crypt_key.key
	rm git_crypt_key.key git_crypt_key.key64

	- name: Set up Quarto
	uses: quarto-dev/quarto-actions/setup@v2

	- name: Install tinytex
	run: quarto install tinytex

	- name: Install R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: '4.4.1'

	- name: Install R Dependencies
	uses: r-lib/actions/setup-renv@v2
	with:
	cache-version: 1

	- name: Render and Publish
	uses: quarto-dev/quarto-actions/publish@v2
	with:
	target: gh-pages
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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