update readme

README.md

@@ -1,59 +1,21 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# Containerised R workflow template
+# WABNet-spatial
 
 <!-- badges: start -->
 
-[![Project Status: WIP – Initial development is in progress, but there
-has not yet been a stable, usable release suitable for the
-public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
+[![Project Status: Active – The project has reached a stable, usable
+state and is being actively
+developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#wip)
 [![Lifecycle:
 experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
-[![container-workflow-template](https://github.com/ecohealthalliance/container-template/actions/workflows/container-workflow-template.yml/badge.svg)](https://github.com/ecohealthalliance/container-template/actions/workflows/container-workflow-template.yml)
 <!-- badges: end -->
 
-This is a template repository of a containerised R workflow built on the
-`targets` framework, made portable using `renv`, and ran manually or
-automatically using `GitHub Actions`. To use this template click on the
-“use this template button” and then select create a new repository.
-
-Check out the
-[`containerTemplateUtils`](https://github.com/ecohealthalliance/containerTemplateUtils)
-package for handling common tasks related to this repo (sending emails,
-uploading files to AWS, etc. )
-
-Note that `git-crypt` is not part of the template repo. See the [EHA M&A
-handbook](https://ecohealthalliance.github.io/eha-ma-handbook/16-encryption.html#set-up-encryption-for-a-repo-that-did-not-previously-use-git-crypt)
-for how to add git-crypt.
-
-Follow the links for more information about:
-
-- [`targets`](https://ecohealthalliance.github.io/eha-ma-handbook/3-projects.html#targets)
-- [`renv`](https://ecohealthalliance.github.io/eha-ma-handbook/3-projects.html#package-management-with-renv)  
-- [git-crypt](https://ecohealthalliance.github.io/eha-ma-handbook/16-encryption.html)
-- [Reproducible
-  workflows](https://github.com/ecohealthalliance/building-blocks-of-reproducibility)
-
-Recommendations:  
-- One function per file in R/  
-- Non-function R scripts in another directory like `scripts/`  
-- Use the same names for targets and function arguments for those
-targets unless a function  
-- Nouns for targets, verbs for functions  
-- Use common suffixes for target types: `_file` for files, `_raw` for
-read-in but unprocessed data  
-- Use `fnmate` and `tflow` RStudio Add-Ins to make this easy, create
-shortcuts for these add-ins
-([talk](https://www.youtube.com/watch?v=jU1Zv21GvT4)), or the `usethis`
-package
-
-## Quick start
-
-- Create repo from template
-- rename .Rproj file
-- streamline packages in `packages.R`
-- modify `.gitattributes` to include any files that may need encryption
-- initialize `git-crypt` for repo
-- add relevant environment variables to `.env` file
-- rename github actions workflows
+This repository contains code to produce figures in the Final Technical
+Report for the project, “Understanding the Risk of Bat-Borne Zoonotic
+Disease Emergence in Western Asia” (HDTRA1-17-1-0064). This project
+identified key factors correlated with the risk of bat viral zoonoses
+from sites across Western Asia. The data needed to reproduce the
+analyses are in the process of being uploaded to separate repositories.
+Contact <[email protected]> with questions.