Updates to figures based on latest data #8
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name: container-workflow-template | |
on: | |
push: | |
branches: | |
- main | |
- master | |
- fix/* | |
- feature/* | |
- enhancement/* | |
pull_request: | |
branches: | |
- main | |
- master | |
workflow_dispatch: | |
branches: | |
- '*' | |
#schedule: | |
# - cron: "0 8 * * *" | |
jobs: | |
container-workflow-template: | |
runs-on: ubuntu-latest # Run on GitHub Actions runner | |
#runs-on: [self-hosted, linux, x64, onprem-aegypti] # Run the workflow on EHA aegypti runner | |
#runs-on: [self-hosted, linux, x64, onprem-prospero] # Run the workflow on EHA prospero runner | |
container: | |
image: rocker/verse:4.2.1 | |
steps: | |
# update to: git config --global --add safe.directory /__w/your-repo/your-repo | |
- name: update permissions for container based workflows | |
run: git config --global --add safe.directory /__w/container-template/container-template | |
- uses: actions/checkout@v3 | |
- name: Install system dependencies | |
run: | | |
apt-get update && apt-get install -y --no-install-recommends \ | |
libcurl4-openssl-dev \ | |
libssl-dev | |
- name: Install packages from renv.lock (with cache) | |
if: ${{ !env.ACT }} ## Doesn't work locally with ACT | |
uses: r-lib/actions/setup-renv@v2 | |
with: | |
cache-version: 3 | |
- name: Install packages from renv.lock (local, no cache) | |
if: ${{ env.ACT }} ## Only locally with ACT, use `act -r` to reuse containers, effectively caching locally | |
run: | | |
renv::restore() | |
shell: Rscript {0} | |
- name: Run targets workflow | |
run: | | |
targets::tar_make() | |
shell: Rscript {0} | |
- name: On failure, launch a temporary interactive debugging session | |
uses: mxschmitt/action-tmate@v3 | |
if: ${{ failure() }} | |
timeout-minutes: 15 | |