Add Single Cell and Spatial Omics shed categories #335
Conversation
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..hehehehe... you're opening a pandora box here with the older tools @pavanvidem :-). I'm all good with this, but, do you know if there are any unintended consequences of pushing again to the tooldshed tools with the same versions and galaxy build numbers? I wouldn't want to mangle the content on the toolshed like that (but maybe the toolshed handles this gracefully, I don't know). |
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afaik, toolshed wouldn't notice the changes in .shed.yml until there is a tool update. Anyways, .shed.yml has only tool metdatata, nothing specific related to the versions. |
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the problem we have though is that the CI is what pushing to the toolshed, and the CI won't push things if tests are not passed :-(, so not sure how to do this (as fixing all the newer requirements from the CI is beyond anyone's time availability). In other words, even if I would merge, the changes wouldn't be pushed... |
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Maybe if we limit this for the tools that are really needed? |
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They don't need to be pushed into the toolshed. It seems Galaxy Tool Metadata Extractor parses only the .shed.yml files not the toolshed. So it should be enough to have the Single Cell category the .shed.yml files. Btw, we also add these categories to all the single cell Galaxy tools from iuc and galaxytools repos. |
Description
Adds recently introduced Single Cell and Spatial Omics shed categories in .shed.yml of all the relevant tools. @pcm32 having this ready asap will help @nomadscientist for her biohackathon project next week. Thanks!