add to decoupler

Mild concern as this one doesn't have macros

tools/tertiary-analysis/decoupler/decoupler_aucell_score.xml

@@ -3,6 +3,9 @@
     <description>
         scores cells using the AUCell method for gene sets.
     </description>
+    <xrefs>
+      <xref type="bio.tools">decoupler</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="1.4.0">decoupler</requirement>
     </requirements>
@@ -173,4 +176,4 @@ If the "write_anndata" parameter is set to "true", the tool will write the modif
     <citations>
         <citation type="doi">10.1093/bioadv/vbac016</citation>
     </citations>
-</tool>
+</tool>

tools/tertiary-analysis/decoupler/decoupler_pathway_inference.xml

@@ -2,6 +2,9 @@
     <description>
         of functional genesets/pathways for scRNA-seq data.
     </description>
+    <xrefs>
+      <xref type="bio.tools">decoupler</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="1.4.0">decoupler</requirement>
     </requirements>
@@ -121,7 +124,7 @@ Usage
 
 This tool extracts pathway activity inference using decoupler.
 
-**Input** 
+**Input**
 
 The input file should be an AnnData object in H5AD format. The tool accepts an H5AD file containing raw or normalized data.
 
@@ -143,7 +146,7 @@ You can also specify whether to use the raw data in the AnnData object instead o
 
 The tool outputs an AnnData object containing the scores in the "obs" field, and tab-separated text files containing the scores for each cell.
 
-If the "write_activities_path" parameter is set to "true", the tool will write the modified AnnData object to an H5AD file. 
+If the "write_activities_path" parameter is set to "true", the tool will write the modified AnnData object to an H5AD file.
 If the "write_inference" parameter is set to "true", the tool will output a tab-separated text file containing the scores for each cell.
 
 

tools/tertiary-analysis/decoupler/decoupler_pseudobulk.xml

@@ -1,5 +1,8 @@
 <tool id="decoupler_pseudobulk" name="Decoupler pseudo-bulk" version="1.4.0+galaxy8" profile="20.05">
     <description>aggregates single cell RNA-seq data for running bulk RNA-seq methods</description>
+    <xrefs>
+      <xref type="bio.tools">decoupler</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="1.4.0">decoupler</requirement>
     </requirements>