Build and Push miniconda templated containers #123
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and Push miniconda templated containers | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| paths: | |
| - "*/templated-conda-env.yaml" | |
| - "*/image_tag" | |
| - "*/post_install_dockerfile" | |
| - "miniconda_template/*" | |
| - ".github/workflows/miniconda_template.yaml" | |
| jobs: | |
| getchanges: | |
| name: Get changed repos | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get changed files | |
| id: changed-files | |
| uses: tj-actions/[email protected] | |
| with: | |
| separator: ',' | |
| - name: Changed base directories for u-mamba based containers | |
| id: changes | |
| run: | | |
| CHANGED_DIRS_JSON=$(echo ${{ steps.changed-files.outputs.all_changed_and_modified_files }} | \ | |
| tr ',' '\n' | \ | |
| awk '{ if ( $0 ~ /\// ) { print $1 } }' | \ | |
| awk -F'/' '{ print $1 }' | sort -u | \ | |
| awk 'system("test -f "$1"/templated-conda-env.yaml")==0 { print $1 }' | \ | |
| jq -R -s -c 'split("\n") | map(select(length > 0))' ) | |
| echo ::set-output name=changeddirsjson::"$CHANGED_DIRS_JSON" | |
| - name: Print changed directories with miniconda based containers | |
| run: | | |
| echo ${{steps.changes.outputs.changeddirsjson}} | |
| outputs: | |
| changeddirs: ${{ steps.changes.outputs.changeddirsjson }} | |
| all_changed_and_modified_files: ${{ steps.changed-files.outputs.all_changed_and_modified_files }} | |
| test: | |
| name: Build image and optionally deploy | |
| runs-on: ubuntu-20.04 | |
| needs: getchanges | |
| strategy: | |
| matrix: | |
| changed: ${{fromJSON(needs.getchanges.outputs.changeddirs)}} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Check matrix | |
| run: echo ${{ matrix.changed }} | |
| - name: Check that tag has been modified | |
| run: | | |
| if [[ ! "${{ needs.getchanges.outputs.all_changed_and_modified_files }}" == *"${{ matrix.changed }}/image_tag"* ]]; then | |
| echo "Tag needs to be changed for container in ${{ matrix.changed }}" | |
| exit 1 | |
| fi | |
| - name: Read image | |
| id: gettag | |
| run: echo "::set-output name=image::$(head -n 1 ${{ matrix.changed }}/image_tag | awk -F':' '{ print $1 }' )" | |
| - name: Read tag | |
| id: gettagver | |
| run: echo "::set-output name=tag::$(head -n 1 ${{ matrix.changed }}/image_tag | awk -F':' '{ print $2 }' )" | |
| - name: Assemble Dockerfile | |
| run: miniconda_template/create_dockerfile.sh ${{ matrix.changed }} | |
| - name: Build image | |
| id: build-image | |
| uses: redhat-actions/buildah-build@v2 | |
| with: | |
| image: ${{ steps.gettag.outputs.image }} | |
| tags: latest ${{ steps.gettagver.outputs.tag }} | |
| context: ${{ matrix.changed }} | |
| dockerfiles: | | |
| ./${{ matrix.changed }}/Dockerfile | |
| - name: Push to Quay | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| id: push-to-quay | |
| uses: redhat-actions/push-to-registry@v2 | |
| with: | |
| image: ${{ steps.gettag.outputs.image }} | |
| tags: latest ${{ steps.gettagver.outputs.tag }} | |
| registry: quay.io/ebigxa | |
| username: ${{ secrets.QUAY_USERNAME }} | |
| password: ${{ secrets.QUAY_TOKEN }} | |
| - name: Use the image | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| run: echo "New image has been pushed to ${{ steps.push-to-quay.outputs.registry-paths }}" |