Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add estimate_contrasts method to report() #372

Merged
merged 10 commits into from
Jun 27, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 3 additions & 0 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -74,6 +74,8 @@ Suggests:
rmarkdown,
rstanarm,
survival,
modelbased,
emmeans,
testthat
VignetteBuilder:
knitr
Expand Down Expand Up @@ -108,6 +110,7 @@ Collate:
'report.compare_performance.R'
'report.data.frame.R'
'report.default.R'
'report.estimate_contrasts.R'
'report.factor.R'
'report.glm.R'
'report.glmmTMB.R'
Expand Down
3 changes: 3 additions & 0 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -39,6 +39,7 @@ S3method(report,character)
S3method(report,compare_performance)
S3method(report,data.frame)
S3method(report,default)
S3method(report,estimate_contrasts)
S3method(report,factor)
S3method(report,glm)
S3method(report,glmmTMB)
Expand Down Expand Up @@ -201,6 +202,7 @@ S3method(report_table,character)
S3method(report_table,compare_performance)
S3method(report_table,data.frame)
S3method(report_table,default)
S3method(report_table,estimate_contrasts)
S3method(report_table,factor)
S3method(report_table,glm)
S3method(report_table,glmmTMB)
Expand Down Expand Up @@ -230,6 +232,7 @@ S3method(report_text,character)
S3method(report_text,compare_performance)
S3method(report_text,data.frame)
S3method(report_text,default)
S3method(report_text,estimate_contrasts)
S3method(report_text,factor)
S3method(report_text,glm)
S3method(report_text,glmmTMB)
Expand Down
52 changes: 52 additions & 0 deletions R/report.estimate_contrasts.R
Original file line number Diff line number Diff line change
@@ -0,0 +1,52 @@
#' Reporting `estimate_contrasts` objects
#'
#' Create reports for `estimate_contrasts` objects.
#'
#' @param x Object of class `estimate_contrasts`.
#' @param table Provide the output of `report_table()` to avoid its
#' re-computation.
#' @inheritParams report
#'
#' @inherit report return seealso
#'
#' @examplesIf requireNamespace("modelbased", quietly = TRUE) && requireNamespace("emmeans", quietly = TRUE)
#' library(modelbased)
#' model <- lm(Sepal.Width ~ Species, data = iris)
#' contr <- estimate_contrasts(model)
#' report(contr)
#' @return An object of class [report()].
#' @export
report.estimate_contrasts <- function(x, ...) {
table <- report_table(x, ...)
text <- report_text(x, table = table, ...)

as.report(text, table = table, ...)
}

# report_table ------------------------------------------------------------

#' @rdname report.estimate_contrasts
#' @export
report_table.estimate_contrasts <- function(x, ...) {
as.report_table(x)
}

# report_text ------------------------------------------------------------

#' @rdname report.estimate_contrasts
#' @export
report_text.estimate_contrasts <- function(x, table = NULL, ...) {
f_table <- insight::format_table(table)

text <- paste0("The difference between ", x$Level1, " and ", x$Level2, " is ",
ifelse(x$Difference < 0, " negative", "positive"), " and statistically ",
ifelse(x$p < 0.05, "significant", "non-significant"),
" (difference = ", f_table$Difference, ", 95% CI ", f_table$`95% CI`, ", ",
names(f_table)[6], " = ", f_table[[6]], ", ", insight::format_p(table$p), ")",
collapse = ". "
)

text <- paste("The marginal contrasts analysis suggests the following.", paste0(text, collapse = ""))

as.report_text(text)
}
1 change: 1 addition & 0 deletions _pkgdown.yml
Original file line number Diff line number Diff line change
Expand Up @@ -89,6 +89,7 @@ reference:
- report.lm
- report.stanreg
- report.test_performance
- report.estimate_contrasts

- title: Report Non-Statistical Objects
desc: |
Expand Down
70 changes: 70 additions & 0 deletions man/report.estimate_contrasts.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.