add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs #21993

pavelToman · 2024-12-09T15:48:50Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#471

add gcmr to 2023a bundle as dependency of scNanoGPS for vscentrum/vsc-software-stack#467

pavelToman · 2024-12-09T15:52:05Z

@boegelbot please test @ generoso

boegelbot · 2024-12-09T15:55:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21993 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21993 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14838

Test results coming soon (I hope)...

- notification for comment with ID 2528476053 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

pavelToman · 2024-12-10T04:23:56Z

Test report by @pavelToman
FAILED
Build succeeded for 1 out of 2 (2 easyconfigs in total)
node4012.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8
See https://gist.github.com/pavelToman/b080793b5f1c170fa42a174cc4d7fa37 for a full test report.

boegelbot · 2024-12-10T06:12:26Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/52d95ffaac73b811173d01b3c0d08f1c for a full test report.

pavelToman · 2024-12-10T09:19:07Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-12-10T09:20:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21993 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21993 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5418

Test results coming soon (I hope)...

- notification for comment with ID 2530940886 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-12-10T20:51:18Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/737b57cde5610b3791a157feacab7d75 for a full test report.

boegel · 2024-12-11T08:30:03Z

Test report by @pavelToman FAILED Build succeeded for 1 out of 2 (2 easyconfigs in total) node4012.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8 See https://gist.github.com/pavelToman/b080793b5f1c170fa42a174cc4d7fa37 for a full test report.

@pavelToman What happened here? Maybe you have something installed in your home directory?

Error: renv 1.0.3 not installed, found 1.0.7.9000 instead

boegel

lgtm

boegel · 2024-12-11T13:05:53Z

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3102.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/94e02ede89f792388fa2f49bab937908 for a full test report.

pavelToman · 2024-12-11T15:50:27Z

Test report by @pavelToman FAILED Build succeeded for 1 out of 2 (2 easyconfigs in total) node4012.donphan.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 545.23.08, Python 3.6.8 See https://gist.github.com/pavelToman/b080793b5f1c170fa42a174cc4d7fa37 for a full test report.

@pavelToman What happened here? Maybe you have something installed in your home directory?
Error: renv 1.0.3 not installed, found 1.0.7.9000 instead

Yes, problem was in my HOME. Gonna run it again.

easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2023.12-foss-2023a.eb

pavelToman · 2024-12-16T11:50:51Z

@boegelbot please test @ generoso

boegelbot · 2024-12-16T11:55:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21993 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21993 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14870

Test results coming soon (I hope)...

- notification for comment with ID 2545414443 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

verdurin · 2024-12-16T14:53:29Z

Test report by @verdurin
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/b8d42c413b331af860a1fc1a3c035615 for a full test report.

verdurin · 2024-12-16T15:03:41Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-12-16T15:10:09Z

@verdurin: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21993 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21993 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5446

Test results coming soon (I hope)...

- notification for comment with ID 2545865702 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

verdurin · 2024-12-16T15:12:18Z

Should have added --skip to the test command...

boegelbot · 2024-12-17T02:09:49Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/7f88c14b56fdd44b5756e5470c739ddf for a full test report.

boegelbot · 2024-12-17T02:31:35Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/962787dd55a8e6bd26985e1a3e976bdc for a full test report.

boegel

lgtm

boegel · 2024-12-17T07:27:58Z

Going in, thanks @pavelToman!

add more packeges to R-bundle-CRAN

de97043

github-actions bot added the change label Dec 9, 2024

pavelToman mentioned this pull request Dec 9, 2024

frbs add to CRAN vscentrum/vsc-software-stack#471

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pavelToman added enhancement and removed change labels Dec 9, 2024

boegel changed the title ~~add more packeges to R-bundle-CRAN~~ add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs Dec 11, 2024

boegel previously approved these changes Dec 11, 2024

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smoors reviewed Dec 14, 2024

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easybuild/easyconfigs/r/R-bundle-CRAN/R-bundle-CRAN-2023.12-foss-2023a.eb Show resolved Hide resolved

add gcmr either to 2023b-CRAN-bundle

8defa58

pavelToman dismissed boegel’s stale review via 8defa58 December 16, 2024 11:50

github-actions bot added the change label Dec 16, 2024

boegel added this to the release after 4.9.4 milestone Dec 17, 2024

boegel removed the change label Dec 17, 2024

boegel approved these changes Dec 17, 2024

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boegel merged commit c125853 into easybuilders:develop Dec 17, 2024
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add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs #21993

add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs #21993

pavelToman commented Dec 9, 2024 •

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add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs #21993

add frbs + gcmr extensions to recent R-bundle-CRAN easyconfigs #21993

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