{bio}[GCCcore/12.3.0] Gubbins v3.3.5, SKA2 v0.3.7, RAxML v8.2.12, ... w/ hybrid avx2 #21824

verdurin · 2024-11-11T12:49:39Z

{bio}[GCCcore/12.3.0] rapidNJ v2.3.3 #21823

…2.3.0.eb, RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb, Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb

github-actions · 2024-11-11T12:54:19Z

Updated software `Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb`

Diff against Autoconf-archive-2023.02.20-GCCcore-12.2.0.eb

easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.2.0.eb

diff --git a/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.2.0.eb b/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb
index 73e0608725..59edf38258 100644
--- a/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.2.0.eb
+++ b/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb
@@ -30,14 +30,14 @@ that the benefits from having this tool available as widely as possible outweigh
 disadvantage that some authors may choose to use it, too, for proprietary software.
 """
 
-toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 source_urls = [GNU_SOURCE]
 sources = [SOURCELOWER_TAR_XZ]
 checksums = ['71d4048479ae28f1f5794619c3d72df9c01df49b1c628ef85fde37596dc31a33']
 
 builddependencies = [
-    ('binutils', '2.39'),
+    ('binutils', '2.40'),
     ('Autotools', '20220317'),
     ('makeinfo', '7.0.3'),
 ]

Diff against Autoconf-archive-2023.02.20-GCCcore-11.3.0.eb

easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-11.3.0.eb

diff --git a/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-11.3.0.eb b/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb
index 7b10ea408d..59edf38258 100644
--- a/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-11.3.0.eb
+++ b/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb
@@ -30,16 +30,16 @@ that the benefits from having this tool available as widely as possible outweigh
 disadvantage that some authors may choose to use it, too, for proprietary software.
 """
 
-toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 source_urls = [GNU_SOURCE]
 sources = [SOURCELOWER_TAR_XZ]
 checksums = ['71d4048479ae28f1f5794619c3d72df9c01df49b1c628ef85fde37596dc31a33']
 
 builddependencies = [
-    ('binutils', '2.38'),
+    ('binutils', '2.40'),
     ('Autotools', '20220317'),
-    ('makeinfo', '6.8'),
+    ('makeinfo', '7.0.3'),
 ]
 
 preconfigopts = 'autoreconf -i -f &&'

Diff against Autoconf-archive-2021.02.19-GCCcore-10.2.0.eb

easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2021.02.19-GCCcore-10.2.0.eb

diff --git a/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2021.02.19-GCCcore-10.2.0.eb b/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb
index d5997d9581..59edf38258 100644
--- a/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2021.02.19-GCCcore-10.2.0.eb
+++ b/easybuild/easyconfigs/a/Autoconf-archive/Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb
@@ -11,7 +11,7 @@
 easyblock = 'ConfigureMake'
 
 name = 'Autoconf-archive'
-version = '2021.02.19'
+version = '2023.02.20'
 
 homepage = "https://www.gnu.org/software/autoconf-archive"
 
@@ -30,16 +30,16 @@ that the benefits from having this tool available as widely as possible outweigh
 disadvantage that some authors may choose to use it, too, for proprietary software.
 """
 
-toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 source_urls = [GNU_SOURCE]
 sources = [SOURCELOWER_TAR_XZ]
-checksums = ['e8a6eb9d28ddcba8ffef3fa211653239e9bf239aba6a01a6b7cfc7ceaec69cbd']
+checksums = ['71d4048479ae28f1f5794619c3d72df9c01df49b1c628ef85fde37596dc31a33']
 
 builddependencies = [
-    ('binutils', '2.35'),
-    ('Autotools', '20200321'),
-    ('makeinfo', '6.7'),
+    ('binutils', '2.40'),
+    ('Autotools', '20220317'),
+    ('makeinfo', '7.0.3'),
 ]
 
 preconfigopts = 'autoreconf -i -f &&'

Updated software `Gubbins-3.3.5-foss-2023a.eb`

Diff against Gubbins-2.4.0.eb

easybuild/easyconfigs/g/Gubbins/Gubbins-2.4.0.eb

diff --git a/easybuild/easyconfigs/g/Gubbins/Gubbins-2.4.0.eb b/easybuild/easyconfigs/g/Gubbins/Gubbins-3.3.5-foss-2023a.eb
index 7b9bbd1be4..1385682f57 100644
--- a/easybuild/easyconfigs/g/Gubbins/Gubbins-2.4.0.eb
+++ b/easybuild/easyconfigs/g/Gubbins/Gubbins-3.3.5-foss-2023a.eb
@@ -1,43 +1,65 @@
-##
-# This is a contribution from DeepThought HPC Service, Flinders University, Adelaide, Australia
-# Homepage: 	https://staff.flinders.edu.au/research/deep-thought
-#
-# Authors::	Robert Qiao <[email protected]>
-# License::	GPLv2.0
-#
-# Notes::	This is a conda version installation
-##
-
-easyblock = 'Conda'
+# This easyconfig was created by the BEAR Software team at the University of Birmingham.
+easyblock = 'ConfigureMake'
 
 name = 'Gubbins'
-version = '2.4.0'
+version = '3.3.5'
 
-homepage = 'https://sanger-pathogens.github.io/gubbins'
-description = """
-Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences)
-is an algorithm that iteratively identifies loci containing elevated densities of base
-substitutions while concurrently constructing a phylogeny based on the putative point mutations
-outside of these regions. Simulations demonstrate the algorithm generates highly accurate
-reconstructions under realistic models of short-term bacterial evolution, and can be run
-in only a few hours on alignments of hundreds of bacterial genome sequences.
-"""
+homepage = "https://nickjcroucher.github.io/gubbins/"
+description = """Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that
+ iteratively identifies loci containing elevated densities of base substitutions, which are marked as recombinations,
+ while concurrently constructing a phylogeny based on the putative point mutations outside of these regions.
+ Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term
+ bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences."""
 
-toolchain = SYSTEM
+toolchain = {'name': 'foss', 'version': '2023a'}
 
-channels = ['r', 'conda-forge', 'bioconda']
+source_urls = ['https://github.com/nickjcroucher/gubbins/archive/refs/tags/']
+sources = ['v%(version)s.tar.gz']
+checksums = ['4ee363f82708bdda0c00d1c6c334cf20127bd852ee488619f61140771a279774']
 
-requirements = '%(namelower)s=%(version)s python=3.6'
+builddependencies = [
+    ('Autotools', '20220317'),
+    ('Autoconf-archive', '2023.02.20'),
+    ('pkgconf', '1.9.5'),
+    ('Check', '0.15.2'),
+    ('subunit', '1.4.4'),
+]
 
 dependencies = [
-    ('Miniconda3', '4.7.10', '', SYSTEM)
+    ('Python', '3.11.3'),
+    ('Biopython', '1.83'),
+    ('DendroPy', '4.6.1'),
+    ('numba', '0.58.1'),
+    ('SciPy-bundle', '2023.07'),
+    ('FastTree', '2.1.11'),
+    ('IQ-TREE', '2.3.5'),
+    ('rapidNJ', '2.3.3'),
+    ('RAxML', '8.2.12', '-hybrid-avx2'),
+    ('RAxML-NG', '1.2.0'),
+    ('SKA2', '0.3.7'),
+    ('dill', '0.3.7'),
+    ('multiprocess', '0.70.15'),
+]
+
+preconfigopts = "autoreconf -i && "
+# runtest = 'check'  # runs the Python tests and this causes package to be installed into the Python install
+postinstallcmds = [
+    """sed -i 's/self.executable = "iqtree"/self.executable = "iqtree2"/' python/gubbins/treebuilders.py""",
+    "cd python && python -m pip install --prefix %(installdir)s --no-build-isolation . "
 ]
 
-sanity_check_commands = [('gubbins', '-h')]
+modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'}
 
 sanity_check_paths = {
-    'files': ['bin/run_gubbins.py'],
-    'dirs': ['bin'],
+    'files': ['bin/gubbins', 'lib/libgubbins.%s' % SHLIB_EXT],
+    'dirs': [],
 }
 
+sanity_check_commands = [
+    "gubbins --help",
+    "run_gubbins.py --version",
+    'python -s -c "import gubbins"',
+    'PIP_DISABLE_PIP_VERSION_CHECK=true python -s -m pip check',
+]
+
 moduleclass = 'bio'

Diff against Gubbins-3.3.5-foss-2022b.eb

easybuild/easyconfigs/g/Gubbins/Gubbins-3.3.5-foss-2022b.eb

diff --git a/easybuild/easyconfigs/g/Gubbins/Gubbins-3.3.5-foss-2022b.eb b/easybuild/easyconfigs/g/Gubbins/Gubbins-3.3.5-foss-2023a.eb
index 99c52d785f..1385682f57 100644
--- a/easybuild/easyconfigs/g/Gubbins/Gubbins-3.3.5-foss-2022b.eb
+++ b/easybuild/easyconfigs/g/Gubbins/Gubbins-3.3.5-foss-2023a.eb
@@ -11,7 +11,7 @@ description = """Gubbins (Genealogies Unbiased By recomBinations In Nucleotide S
  Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term
  bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences."""
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2023a'}
 
 source_urls = ['https://github.com/nickjcroucher/gubbins/archive/refs/tags/']
 sources = ['v%(version)s.tar.gz']
@@ -20,21 +20,21 @@ checksums = ['4ee363f82708bdda0c00d1c6c334cf20127bd852ee488619f61140771a279774']
 builddependencies = [
     ('Autotools', '20220317'),
     ('Autoconf-archive', '2023.02.20'),
-    ('pkgconf', '1.9.3'),
+    ('pkgconf', '1.9.5'),
     ('Check', '0.15.2'),
-    ('subunit', '1.4.3'),
+    ('subunit', '1.4.4'),
 ]
 
 dependencies = [
-    ('Python', '3.10.8'),
-    ('Biopython', '1.81'),
-    ('DendroPy', '4.5.2'),
+    ('Python', '3.11.3'),
+    ('Biopython', '1.83'),
+    ('DendroPy', '4.6.1'),
     ('numba', '0.58.1'),
-    ('SciPy-bundle', '2023.02'),
+    ('SciPy-bundle', '2023.07'),
     ('FastTree', '2.1.11'),
-    ('IQ-TREE', '2.2.2.6'),
+    ('IQ-TREE', '2.3.5'),
     ('rapidNJ', '2.3.3'),
-    ('RAxML', '8.2.12', '-avx2'),
+    ('RAxML', '8.2.12', '-hybrid-avx2'),
     ('RAxML-NG', '1.2.0'),
     ('SKA2', '0.3.7'),
     ('dill', '0.3.7'),

Updated software `RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb`

Diff against RAxML-8.2.12-gompi-2022b-avx2.eb

easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2022b-avx2.eb

diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2022b-avx2.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb
index 8b13f18b2d..abcd30d2e3 100644
--- a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2022b-avx2.eb
+++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb
@@ -2,28 +2,23 @@ easyblock = 'MakeCp'
 
 name = 'RAxML'
 version = '8.2.12'
-versionsuffix = '-avx2'
+versionsuffix = '-hybrid-avx2'
 
 homepage = 'https://github.com/stamatak/standard-RAxML'
 description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees."
 
-toolchain = {'name': 'gompi', 'version': '2022b'}
+toolchain = {'name': 'gompi', 'version': '2023a'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://github.com/stamatak/standard-RAxML/archive/']
 sources = ['v%(version)s.zip']
 checksums = ['abe6978c6027e897ebed67066836e4eadd57ecd0d042045634424dd001e86105']
 
-buildopts = '-f Makefile.AVX2.gcc CC="$CC" && rm *.o && '
-buildopts += 'make -j %(parallel)s -f Makefile.AVX2.PTHREADS.gcc CC="$CC" && rm *.o && '
-buildopts += 'make -j %(parallel)s -f Makefile.AVX2.HYBRID.gcc CC="$CC"'
+buildopts = '-f Makefile.AVX2.HYBRID.gcc CC="$CC"'
 
-files_to_copy = [
-    (["raxmlHPC-AVX2", "raxmlHPC-PTHREADS-AVX2", "raxmlHPC-HYBRID-AVX2"], "bin"),
-    "usefulScripts", "README", "manual"
-]
+files_to_copy = [(["raxmlHPC-HYBRID-AVX2"], "bin"), "usefulScripts", "README", "manual"]
 
-postinstallcmds = ["cd %(installdir)s/bin && ln -s raxmlHPC-AVX2 raxmlHPC"]
+postinstallcmds = ["cd %(installdir)s/bin && ln -s raxmlHPC-HYBRID-AVX2 raxmlHPC"]
 
 sanity_check_paths = {
     'files': ['bin/raxmlHPC'],

Diff against RAxML-8.2.12-gompi-2021b-hybrid-avx2.eb

easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2021b-hybrid-avx2.eb

diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2021b-hybrid-avx2.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb
index 7be898198d..abcd30d2e3 100644
--- a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2021b-hybrid-avx2.eb
+++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb
@@ -7,7 +7,7 @@ versionsuffix = '-hybrid-avx2'
 homepage = 'https://github.com/stamatak/standard-RAxML'
 description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees."
 
-toolchain = {'name': 'gompi', 'version': '2021b'}
+toolchain = {'name': 'gompi', 'version': '2023a'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://github.com/stamatak/standard-RAxML/archive/']

Diff against RAxML-8.2.12-gompi-2021a-hybrid-avx2.eb

easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2021a-hybrid-avx2.eb

diff --git a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2021a-hybrid-avx2.eb b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb
index bcf227398b..abcd30d2e3 100644
--- a/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2021a-hybrid-avx2.eb
+++ b/easybuild/easyconfigs/r/RAxML/RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb
@@ -7,7 +7,7 @@ versionsuffix = '-hybrid-avx2'
 homepage = 'https://github.com/stamatak/standard-RAxML'
 description = "RAxML search algorithm for maximum likelihood based inference of phylogenetic trees."
 
-toolchain = {'name': 'gompi', 'version': '2021a'}
+toolchain = {'name': 'gompi', 'version': '2023a'}
 toolchainopts = {'usempi': True}
 
 source_urls = ['https://github.com/stamatak/standard-RAxML/archive/']

Updated software `SKA2-0.3.7-GCCcore-12.3.0.eb`

Diff against SKA2-0.3.7-GCCcore-12.2.0.eb

easybuild/easyconfigs/s/SKA2/SKA2-0.3.7-GCCcore-12.2.0.eb

diff --git a/easybuild/easyconfigs/s/SKA2/SKA2-0.3.7-GCCcore-12.2.0.eb b/easybuild/easyconfigs/s/SKA2/SKA2-0.3.7-GCCcore-12.3.0.eb
index ec330ffc75..a0950a90e0 100644
--- a/easybuild/easyconfigs/s/SKA2/SKA2-0.3.7-GCCcore-12.2.0.eb
+++ b/easybuild/easyconfigs/s/SKA2/SKA2-0.3.7-GCCcore-12.3.0.eb
@@ -7,7 +7,7 @@ homepage = 'https://docs.rs/ska/latest/ska/'
 description = """Split k-mer analysis (version 2) uses exact matching of split k-mer sequences to align closely
  related sequences, typically small haploid genomes such as bacteria and viruses."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 sources = []
 checksums = [
@@ -381,7 +381,7 @@ crates = [
 ]
 
 builddependencies = [
-    ('binutils', '2.39'),
+    ('binutils', '2.40'),
     ('Rust', '1.75.0'),
 ]

Updated software `subunit-1.4.4-GCCcore-12.3.0.eb`

Diff against subunit-1.4.3-GCCcore-12.2.0.eb

easybuild/easyconfigs/s/subunit/subunit-1.4.3-GCCcore-12.2.0.eb

diff --git a/easybuild/easyconfigs/s/subunit/subunit-1.4.3-GCCcore-12.2.0.eb b/easybuild/easyconfigs/s/subunit/subunit-1.4.4-GCCcore-12.3.0.eb
index 059b784a9f..1fefd3a500 100644
--- a/easybuild/easyconfigs/s/subunit/subunit-1.4.3-GCCcore-12.2.0.eb
+++ b/easybuild/easyconfigs/s/subunit/subunit-1.4.4-GCCcore-12.3.0.eb
@@ -2,27 +2,28 @@
 easyblock = 'ConfigureMake'
 
 name = 'subunit'
-version = '1.4.3'
+version = '1.4.4'
 
 homepage = "https://github.com/testing-cabal/subunit"
 description = """Subunit is a streaming protocol for test results."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 source_urls = ['https://github.com/testing-cabal/subunit/archive/refs/tags/']
 sources = ['%(version)s.tar.gz']
-checksums = ['dc4bf970521d3382eb33cd58aff8b5b65a0d86e1fe8d5d97abb969413909907c']
+checksums = ['395787f52b8b36830c331faca546ea6c248b6cbd8de95989c2f64d432cc90531']
 
 builddependencies = [
-    ('binutils', '2.39'),
+    ('binutils', '2.40'),
     ('Autotools', '20220317'),
-    ('pkgconf', '1.9.3'),
+    ('pkgconf', '1.9.5'),
+    ('poetry', '1.7.1'),
 ]
 
 dependencies = [
     ('Check', '0.15.2'),
     ('CppUnit', '1.15.1'),
-    ('Python', '3.10.8'),
+    ('Python', '3.11.3'),
 ]
 
 preconfigopts = "autoreconf -vi &&"
@@ -37,14 +38,17 @@ exts_default_options = {
 }
 
 exts_list = [
-    ('iso8601', '1.1.0', {
-        'checksums': ['32811e7b81deee2063ea6d2e94f8819a86d1f3811e49d23623a41fa832bef03f'],
+    ('iso8601', '2.1.0', {
+        'checksums': ['6b1d3829ee8921c4301998c909f7829fa9ed3cbdac0d3b16af2d743aed1ba8df'],
+    }),
+    ('pbr', '6.1.0', {
+        'checksums': ['788183e382e3d1d7707db08978239965e8b9e4e5ed42669bf4758186734d5f24'],
     }),
     ('fixtures', '4.1.0', {
         'checksums': ['82b1c5e69f615526ef6c067188a1e6c6067df7f88332509c99f8b8fdbb9776f3'],
     }),
-    ('testtools', '2.6.0', {
-        'checksums': ['28b65e14c0f2d3ecbbfb5f55c9dcde5e4faa80ac16a37a823909a1fe3cbcb30a'],
+    ('testtools', '2.7.2', {
+        'checksums': ['5be5bbc1f0fa0f8b60aca6ceec07845d41d0c475cf445bfadb4d2c45ec397ea3'],
     }),
 ]

…asyconfigs into 20241111124935_new_pr_Gubbins335

verdurin · 2024-12-17T10:29:24Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-12-17T10:30:09Z

@verdurin: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21824 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21824 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5454

Test results coming soon (I hope)...

- notification for comment with ID 2548085040 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

verdurin · 2024-12-17T10:35:01Z

Test report by @verdurin
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/2172049d9b116ab57b3e5a864a0f9ae7 for a full test report.

boegelbot · 2024-12-17T10:36:28Z

Test report by @boegelbot
SUCCESS
Build succeeded for 6 out of 6 (5 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.19
See https://gist.github.com/boegelbot/915ce18048bc7ea374dac42f913a0596 for a full test report.

adding easyconfigs: Gubbins-3.3.5-foss-2023a.eb, SKA2-0.3.7-GCCcore-1…

3aea08f

…2.3.0.eb, RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb, Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb

verdurin added the update label Nov 11, 2024

Add missing subunit

7e4eeed

Software User added 3 commits November 13, 2024 10:16

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

981cef5

…asyconfigs into 20241111124935_new_pr_Gubbins335

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

aa94881

…asyconfigs into 20241111124935_new_pr_Gubbins335

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{bio}[GCCcore/12.3.0] Gubbins v3.3.5, SKA2 v0.3.7, RAxML v8.2.12, ... w/ hybrid avx2 #21824

{bio}[GCCcore/12.3.0] Gubbins v3.3.5, SKA2 v0.3.7, RAxML v8.2.12, ... w/ hybrid avx2 #21824

verdurin commented Nov 11, 2024 •

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github-actions bot commented Nov 11, 2024 •

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verdurin commented Dec 17, 2024

boegelbot commented Dec 17, 2024

verdurin commented Dec 17, 2024

boegelbot commented Dec 17, 2024

{bio}[GCCcore/12.3.0] Gubbins v3.3.5, SKA2 v0.3.7, RAxML v8.2.12, ... w/ hybrid avx2 #21824

Are you sure you want to change the base?

{bio}[GCCcore/12.3.0] Gubbins v3.3.5, SKA2 v0.3.7, RAxML v8.2.12, ... w/ hybrid avx2 #21824

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verdurin commented Nov 11, 2024 • edited Loading

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Updated software Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb

Updated software Gubbins-3.3.5-foss-2023a.eb

Updated software RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb

Updated software SKA2-0.3.7-GCCcore-12.3.0.eb

Updated software subunit-1.4.4-GCCcore-12.3.0.eb

verdurin commented Dec 17, 2024

boegelbot commented Dec 17, 2024

verdurin commented Dec 17, 2024

boegelbot commented Dec 17, 2024

verdurin commented Nov 11, 2024 •

edited

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github-actions bot commented Nov 11, 2024 •

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Updated software `Autoconf-archive-2023.02.20-GCCcore-12.3.0.eb`

Updated software `Gubbins-3.3.5-foss-2023a.eb`

Updated software `RAxML-8.2.12-gompi-2023a-hybrid-avx2.eb`

Updated software `SKA2-0.3.7-GCCcore-12.3.0.eb`

Updated software `subunit-1.4.4-GCCcore-12.3.0.eb`