{bio}[GCC/12.3.0] VEP v113, DBD-mysql v4.052, Bio-DB-HTS v3.01, ...

[branfosj]

(created using eb --new-pr)

[branfosj]

@boegelbot please test @ generoso

[boegelbot]

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=21772 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21772 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 14603

Test results coming soon (I hope)...

- notification for comment with ID 2450155080 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[branfosj]

@boegelbot please test @ jsc-zen3

[boegelbot]

@branfosj: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21772 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21772 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 5179

Test results coming soon (I hope)...

- notification for comment with ID 2450166870 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[verdurin]

Test report by @verdurin
FAILED
Build succeeded for 7 out of 8 (4 easyconfigs in total)
easybuild-el8.cloud.in.bmrc.ox.ac.uk - Linux Rocky Linux 8.10, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/47e40ad9a47cfc16dd1945781c48350a for a full test report.

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/deb9d318fb802d3b4a6dde158c8d56a5 for a full test report.

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/cc77e3d0debefd7b4c31ac6b524b143d for a full test report.

[verdurin]

Test failures:

Testing VEP installation
./t/Haplo_AnnotationSource_Database_Transcript.t ..... ok
./t/AnnotationSource_Cache_Transcript.t .............. ok
./t/AnnotationSource_File_BED.t ...................... ok
./t/InputBuffer.t .................................... ok
./t/Parser_ID.t ...................................... ok
./t/AnnotationSource_Cache_Variation.t ............... ok
./t/BaseVEP.t ........................................ ok
./t/AnnotationSource_Cache_VariationTabix.t .......... ok

#   Failed test 'run - count up/downstream (default)'
#   at ./t/Runner.t line 534.
#          got: '2'
#     expected: '1'

#   Failed test 'run - count up/downstream (10000)'
#   at ./t/Runner.t line 551.
#          got: '3'
#     expected: '2'

#   Failed test 'run - count up/downstream (1000,2000)'
#   at ./t/Runner.t line 570.
#          got: '5'
#     expected: '4'
# Looks like you failed 3 tests of 110.
./t/Runner.t .........................................
Dubious, test returned 3 (wstat 768, 0x300)
Failed 3/110 subtests
        (less 6 skipped subtests: 101 okay)

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 13 out of 13 (4 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/d02b7b412272e4c42a5a301a476e82aa for a full test report.

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 14 out of 14 (4 easyconfigs in total)
bear-pg0210u03a.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8480CL (sapphirerapids), Python 3.6.8
See https://gist.github.com/branfosj/50d26d86566779fec549d8f28fb6200e for a full test report.

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 23 out of 23 (4 easyconfigs in total)
bear-pg0211u08b.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz (cascadelake), Python 3.6.8
See https://gist.github.com/branfosj/1a4b40636e4a72f047f51e520d70d305 for a full test report.

[branfosj]

closing for #21801