fix trailing whitespace in easyconfigs

easybuilders · Dec 18, 2024 · 9489d47 · 9489d47
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diff --git a/easybuild/easyconfigs/b/BGEN-enkre/BGEN-enkre-1.1.7-GCC-12.3.0.eb b/easybuild/easyconfigs/b/BGEN-enkre/BGEN-enkre-1.1.7-GCC-12.3.0.eb
@@ -9,12 +9,12 @@ name = 'BGEN-enkre'
 version = '1.1.7'
 
 homepage = 'https://enkre.net/cgi-bin/code/bgen/dir?ci=trunk'
-description = """This repository contains a reference implementation 
-of the BGEN format, written in C++. The library can be used as the 
-basis for BGEN support in other software, or as a reference for 
+description = """This repository contains a reference implementation
+of the BGEN format, written in C++. The library can be used as the
+basis for BGEN support in other software, or as a reference for
 developers writing their own implementations of the BGEN format.
 Please cite:
-Band, G. and Marchini, J., "BGEN: a binary file format for imputed genotype and haplotype data", 
+Band, G. and Marchini, J., "BGEN: a binary file format for imputed genotype and haplotype data",
 bioArxiv 308296; doi: https://doi.org/10.1101/308296
 """
 

diff --git a/easybuild/easyconfigs/b/BioPerl/BioPerl-1.7.8-GCCcore-13.2.0.eb b/easybuild/easyconfigs/b/BioPerl/BioPerl-1.7.8-GCCcore-13.2.0.eb
@@ -3,7 +3,7 @@
 #  John Dey [email protected]
 #
 #  Fred Hutchinson Cancer Research Center
-#  Thomas Eylenbosch - Gluo NV 
+#  Thomas Eylenbosch - Gluo NV
 
 easyblock = 'Bundle'
 

diff --git a/easybuild/easyconfigs/c/COMSOL/COMSOL-6.3.0.290.eb b/easybuild/easyconfigs/c/COMSOL/COMSOL-6.3.0.290.eb
@@ -5,7 +5,7 @@ homepage = 'https://www.comsol.com'
 description = """
 COMSOL Multiphysics is a general-purpose software platform, based on
 advanced numerical methods, for modeling and simulating physics-based
-problems. 
+problems.
 """
 
 toolchain = SYSTEM

diff --git a/easybuild/easyconfigs/c/cisDIVERSITY/cisDIVERSITY-1.1-foss-2023a-Python-2.7.18.eb b/easybuild/easyconfigs/c/cisDIVERSITY/cisDIVERSITY-1.1-foss-2023a-Python-2.7.18.eb
@@ -5,7 +5,7 @@ version = '1.1'
 versionsuffix = '-Python-%(pyver)s'
 
 homepage = 'https://github.com/NarlikarLab/cisDIVERSITY/'
-description = """A module discovery tool used for finding diverse sequence architectures, 
+description = """A module discovery tool used for finding diverse sequence architectures,
 each one characterized by presence or absence of de novo motifs."""
 
 toolchain = {'name': 'foss', 'version': '2023a'}

diff --git a/easybuild/easyconfigs/e/EVidenceModeler/EVidenceModeler-2.1.0-foss-2023a.eb b/easybuild/easyconfigs/e/EVidenceModeler/EVidenceModeler-2.1.0-foss-2023a.eb
@@ -4,7 +4,7 @@ name = 'EVidenceModeler'
 version = '2.1.0'
 
 homepage = 'https://github.com/EVidenceModeler/EVidenceModeler'
-description = """ EVM provides a flexible and intuitive framework for 
+description = """ EVM provides a flexible and intuitive framework for
 combining diverse evidence types into a single automated gene structure annotation system."""
 
 toolchain = {'name': 'foss', 'version': '2023a'}

diff --git a/easybuild/easyconfigs/f/FASTA/FASTA-36.3.8i-GCC-12.3.0.eb b/easybuild/easyconfigs/f/FASTA/FASTA-36.3.8i-GCC-12.3.0.eb
@@ -7,8 +7,8 @@ version = "36.3.8i"
 local_version_date = '14-Nov-2020'
 
 homepage = 'https://fasta.bioch.virginia.edu/fasta_www2/fasta_list2.shtml'
-description = """The FASTA programs find regions of local or global (new) similarity between 
-protein or DNA sequences, either by searching Protein or DNA databases, or by identifying 
+description = """The FASTA programs find regions of local or global (new) similarity between
+protein or DNA sequences, either by searching Protein or DNA databases, or by identifying
 local duplications within a sequence."""
 
 toolchain = {'name': 'GCC', 'version': '12.3.0'}

diff --git a/easybuild/easyconfigs/h/HyperQueue/HyperQueue-0.20.0.eb b/easybuild/easyconfigs/h/HyperQueue/HyperQueue-0.20.0.eb
@@ -7,9 +7,9 @@ homepage = 'https://it4innovations.github.io/hyperqueue/stable/'
 description = """
 HyperQueue is a tool designed to simplify execution of large workflows (task graphs) on HPC clusters.
 It allows you to execute a large number of tasks in a simple way, without having to manually submit jobs
-into batch schedulers like Slurm or PBS. 
+into batch schedulers like Slurm or PBS.
 
-You just specify what you want to compute – HyperQueue will automatically ask for computational resources and 
+You just specify what you want to compute – HyperQueue will automatically ask for computational resources and
 dynamically load-balance tasks across all allocated nodes and cores.
 HyperQueue can also work without Slurm/PBS as a general task executor.
 """

diff --git a/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.3.1-GCC-12.3.0.eb b/easybuild/easyconfigs/j/Jellyfish/Jellyfish-2.3.1-GCC-12.3.0.eb
@@ -1,8 +1,8 @@
 ##
-# This is a contribution from DeepThought HPC Service, Flinders University, Adelaide, Australia 
+# This is a contribution from DeepThought HPC Service, Flinders University, Adelaide, Australia
 # Homepage:     https://staff.flinders.edu.au/research/deep-thought
 #
-# Authors::     Robert Qiao <[email protected]> 
+# Authors::     Robert Qiao <[email protected]>
 # License::     GPLv3.0
 #
 # Notes::
@@ -24,7 +24,7 @@ checksums = ['ee032b57257948ca0f0610883099267572c91a635eecbd88ae5d8974c2430fcd']
 
 parallel = 1
 
-# The tests for the Bloom filter are statistical tests and can randomly fail, 
+# The tests for the Bloom filter are statistical tests and can randomly fail,
 # they actually don't make a lot of sense
 runtest = "check GTEST_FILTER=-'*Bloom*'"
 

diff --git a/easybuild/easyconfigs/n/NCO/NCO-5.2.9-foss-2024a.eb b/easybuild/easyconfigs/n/NCO/NCO-5.2.9-foss-2024a.eb
@@ -4,7 +4,7 @@ name = 'NCO'
 version = '5.2.9'
 
 homepage = "https://github.com/nco/nco"
-description = """The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, 
+description = """The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats,
 including DAP, HDF4, and HDF5."""
 
 toolchain = {'name': 'foss', 'version': '2024a'}

diff --git a/easybuild/easyconfigs/n/ncview/ncview-2.1.11-gompi-2024a.eb b/easybuild/easyconfigs/n/ncview/ncview-2.1.11-gompi-2024a.eb
@@ -7,10 +7,10 @@ name = 'ncview'
 version = '2.1.11'
 
 homepage = 'http://meteora.ucsd.edu/~pierce/ncview_home_page.html'
-description = """Ncview is a visual browser for netCDF format files. 
-Typically you would use ncview to get a quick and easy, push-button 
-look at your netCDF files. You can view simple movies of the data, 
-view along various dimensions, take a look at the actual data values, 
+description = """Ncview is a visual browser for netCDF format files.
+Typically you would use ncview to get a quick and easy, push-button
+look at your netCDF files. You can view simple movies of the data,
+view along various dimensions, take a look at the actual data values,
 change color maps, invert the data, etc."""
 
 toolchain = {'name': 'gompi', 'version': '2024a'}

diff --git a/easybuild/easyconfigs/p/PRSice/PRSice-2.3.5-GCCcore-13.3.0.eb b/easybuild/easyconfigs/p/PRSice/PRSice-2.3.5-GCCcore-13.3.0.eb
@@ -8,8 +8,8 @@ name = 'PRSice'
 version = '2.3.5'
 
 homepage = 'https://choishingwan.github.io/PRSice/'
-description = """PRSice (pronounced 'precise') is a Polygenic Risk 
-Score software for calculating, applying, evaluating and 
+description = """PRSice (pronounced 'precise') is a Polygenic Risk
+Score software for calculating, applying, evaluating and
 plotting the results of polygenic risk scores (PRS) analyses."""
 
 toolchain = {'name': 'GCCcore', 'version': '13.3.0'}

diff --git a/easybuild/easyconfigs/p/PyHMMER/PyHMMER-0.10.15-gompi-2023b.eb b/easybuild/easyconfigs/p/PyHMMER/PyHMMER-0.10.15-gompi-2023b.eb
@@ -8,12 +8,12 @@ version = '0.10.15'
 
 homepage = 'https://github.com/althonos/pyhmmer'
 description = """
-HMMER is a biological sequence analysis tool that uses profile hidden Markov    
-models to search for sequence homologs. HMMER3 is developed and maintained by   
+HMMER is a biological sequence analysis tool that uses profile hidden Markov
+models to search for sequence homologs. HMMER3 is developed and maintained by
 the Eddy/Rivas Laboratory at Harvard University.
 
-pyhmmer is a Python package, implemented using the Cython language, that        
-provides bindings to HMMER3. It directly interacts with the HMMER internals,    
+pyhmmer is a Python package, implemented using the Cython language, that
+provides bindings to HMMER3. It directly interacts with the HMMER internals,
 which has the following advantages over CLI wrappers (like hmmer-py)"""
 
 toolchain = {'name': 'gompi', 'version': '2023b'}

diff --git a/easybuild/easyconfigs/p/pmt/pmt-1.3.1-GCCcore-13.3.0-CUDA-12.6.0.eb b/easybuild/easyconfigs/p/pmt/pmt-1.3.1-GCCcore-13.3.0-CUDA-12.6.0.eb
@@ -5,8 +5,8 @@ version = '1.3.1'
 versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://git.astron.nl/RD/pmt'
-description = """PMT is a high-level software library capable of 
-    collecting power consumption measurements on various hardware."""
+description = """PMT is a high-level software library capable of
+collecting power consumption measurements on various hardware."""
 
 toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 

diff --git a/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb b/easybuild/easyconfigs/r/RAxML-NG/RAxML-NG-1.2.2-GCC-13.2.0.eb
@@ -1,6 +1,6 @@
 # EasyBuild easyconfig
 #
-# Contributed from Fred Hutchinson Cancer Research Center, Seattle WA, US 
+# Contributed from Fred Hutchinson Cancer Research Center, Seattle WA, US
 # John Dey [email protected]
 #
 easyblock = 'CMakeMake'

diff --git a/easybuild/easyconfigs/r/ReFrame/ReFrame-4.6.3-GCCcore-13.3.0.eb b/easybuild/easyconfigs/r/ReFrame/ReFrame-4.6.3-GCCcore-13.3.0.eb
@@ -34,7 +34,7 @@ exts_list = [
         # Deps are downloaded to %(installdir)/external, which won't polute the PYTHONPATH, so is ok
         'download_dep_fail': False,
         # ReFrame uses its custom sys.path to find necessary packages, they are not on PYTYHONPATH
-        # Thus, the regular pip sanity check is expected to fail, even if ReFrame would run just fine 
+        # Thus, the regular pip sanity check is expected to fail, even if ReFrame would run just fine
         'sanity_pip_check': False,
         # Set modulename to False, as to skip the sanity_check-step from extension.py (python -c "import reframe")
         # This step would fail, since the regular python interpreter wouldn't find the additional packages in

diff --git a/easybuild/easyconfigs/r/rDock/rDock-24.03.192-GCCcore-13.3.0.eb b/easybuild/easyconfigs/r/rDock/rDock-24.03.192-GCCcore-13.3.0.eb
@@ -7,8 +7,8 @@ version = '24.03.192'
 
 homepage = 'https://rdock.github.io/'
 description = """
-rDock is a fast and versatile Open Source docking program that can be used to dock small 
-molecules against proteins and nucleic acids. It is designed for High Throughput Virtual 
+rDock is a fast and versatile Open Source docking program that can be used to dock small
+molecules against proteins and nucleic acids. It is designed for High Throughput Virtual
 Screening (HTVS) campaigns and Binding Mode prediction studies.
 """
 

diff --git a/easybuild/easyconfigs/r/rapidNJ/rapidNJ-2.3.3-GCCcore-12.3.0.eb b/easybuild/easyconfigs/r/rapidNJ/rapidNJ-2.3.3-GCCcore-12.3.0.eb
@@ -1,4 +1,4 @@
-# This seems to be actively maintained version of the code by the looks of it. 
+# This seems to be actively maintained version of the code by the looks of it.
 # See issue #5
 # https://github.com/somme89/rapidNJ/issues/5
 # why -march=native will not be used
@@ -10,9 +10,9 @@ name = 'rapidNJ'
 version = '2.3.3'
 
 homepage = 'https://github.com/somme89/rapidNJ'
-description = """RapidNJ is an algorithmic engineered implementation of canonical 
-neighbour-joining. It uses an efficient search heuristic to speed-up the core 
-computations of the neighbour-joining method that enables RapidNJ to 
+description = """RapidNJ is an algorithmic engineered implementation of canonical
+neighbour-joining. It uses an efficient search heuristic to speed-up the core
+computations of the neighbour-joining method that enables RapidNJ to
 outperform other state-of-the-art neighbour-joining implementations."""
 
 citing = """Rapid Neighbour Joining. Martin Simonsen, Thomas Mailund and Christian N. S. Pedersen.

diff --git a/easybuild/easyconfigs/s/SAMtools/SAMtools-1.21-GCC-13.3.0.eb b/easybuild/easyconfigs/s/SAMtools/SAMtools-1.21-GCC-13.3.0.eb
@@ -14,7 +14,7 @@ name = 'SAMtools'
 version = '1.21'
 
 homepage = 'https://www.htslib.org/'
-description = """SAM Tools provide various utilities for manipulating alignments in the SAM format, 
+description = """SAM Tools provide various utilities for manipulating alignments in the SAM format,
  including sorting, merging, indexing and generating alignments in a per-position format."""
 
 toolchain = {'name': 'GCC', 'version': '13.3.0'}

diff --git a/easybuild/easyconfigs/s/StringTie/StringTie-2.2.3-GCC-12.3.0.eb b/easybuild/easyconfigs/s/StringTie/StringTie-2.2.3-GCC-12.3.0.eb
@@ -1,7 +1,7 @@
 # This file is an EasyBuild reciPY as per https://easybuilders.github.io/easybuild/
 # Author: Pablo Escobar Lopez
 # sciCORE - University of Basel
-# SIB Swiss Institute of Bioinformatics 
+# SIB Swiss Institute of Bioinformatics
 
 easyblock = 'MakeCp'
 

diff --git a/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.4-GCCcore-13.3.0.eb b/easybuild/easyconfigs/s/sparsehash/sparsehash-2.0.4-GCCcore-13.3.0.eb
@@ -2,7 +2,7 @@
 # Author: Pavel Grochal (INUITS)
 # Update: Pavel Tománek (INUITS)
 # License: GPLv2
-# Updated to GCCcore-12.3.0 
+# Updated to GCCcore-12.3.0
 # Author: J. Sassmannshausen (Imperial College London/UK)
 
 easyblock = 'ConfigureMake'

diff --git a/easybuild/easyconfigs/s/subset-bam/subset-bam-1.1.0.eb b/easybuild/easyconfigs/s/subset-bam/subset-bam-1.1.0.eb
@@ -4,7 +4,7 @@ name = 'subset-bam'
 version = '1.1.0'
 
 homepage = 'https://github.com/10XGenomics/subset-bam'
-description = """subset-bam is a tool to subset a 10x Genomics BAM file based on a tag, 
+description = """subset-bam is a tool to subset a 10x Genomics BAM file based on a tag,
 most commonly the cell barcode tag."""
 
 toolchain = SYSTEM

diff --git a/easybuild/easyconfigs/u/UCC-CUDA/UCC-CUDA-1.2.0-GCCcore-13.2.0-CUDA-12.4.0.eb b/easybuild/easyconfigs/u/UCC-CUDA/UCC-CUDA-1.2.0-GCCcore-13.2.0-CUDA-12.4.0.eb
@@ -6,7 +6,7 @@ versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://www.openucx.org/'
 description = """UCC (Unified Collective Communication) is a collective
-communication operations API and library that is flexible, complete, and 
+communication operations API and library that is flexible, complete, and
 feature-rich for current and emerging programming models and runtimes.
 
 This module adds the UCC CUDA support.

diff --git a/easybuild/easyconfigs/u/UCC-CUDA/UCC-CUDA-1.3.0-GCCcore-13.3.0-CUDA-12.6.0.eb b/easybuild/easyconfigs/u/UCC-CUDA/UCC-CUDA-1.3.0-GCCcore-13.3.0-CUDA-12.6.0.eb
@@ -6,7 +6,7 @@ versionsuffix = '-CUDA-%(cudaver)s'
 
 homepage = 'https://www.openucx.org/'
 description = """UCC (Unified Collective Communication) is a collective
-communication operations API and library that is flexible, complete, and 
+communication operations API and library that is flexible, complete, and
 feature-rich for current and emerging programming models and runtimes.
 
 This module adds the UCC CUDA support.

diff --git a/easybuild/easyconfigs/u/utf8proc/utf8proc-2.9.0-GCCcore-13.3.0.eb b/easybuild/easyconfigs/u/utf8proc/utf8proc-2.9.0-GCCcore-13.3.0.eb
@@ -4,7 +4,7 @@ name = 'utf8proc'
 version = '2.9.0'
 
 homepage = 'https://github.com/JuliaStrings/utf8proc'
-description = """utf8proc is a small, clean C library that provides Unicode normalization, case-folding, 
+description = """utf8proc is a small, clean C library that provides Unicode normalization, case-folding,
 and other operations for data in the UTF-8 encoding."""
 
 toolchain = {'name': 'GCCcore', 'version': '13.3.0'}