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  1. cNMF cNMF Public

    Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

    Jupyter Notebook 278 57

  2. scsim scsim Public

    Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells and cells with shared gene-expression programs.

    Python 25 7

  3. pyWNN pyWNN Public

    Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)

    Jupyter Notebook 12 2

  4. SC-Ebola SC-Ebola Public

    Analysis scripts used in the analysis of Seq-Well and CyTOF datasets of Ebola virus infected PBMCs

    Jupyter Notebook 5 1

  5. lassa_fever_gwas lassa_fever_gwas Public

    Jupyter notebooks and helper scripts for the Sabeti Lab Lassa Fever GWAS

    Jupyter Notebook 3 1

  6. dropSeqPipe-dak dropSeqPipe-dak Public

    run dropseq - slight modifications from original dropSeqPipe

    Python 2