nu-ngs02

Lectures

Day 1

1. Part 1 | Introduction to genetic variants [Canvas]
2. Part 2 | Crash tutorial for variant calling

Day 2

1. Part 1 | Tutorial for GATK Variant calling

Day 3

1. Part 1 | QC of genetic variants [Canvas]
2. Part 2 | Tutorial for VCF-tools
3. Part 2 | Tutorial for variant annotation

Day 4

1. Part 1 | GWAS Study design [Canvas]
2. Part 2 | Tutorial of Genome Wide Association Analysis
3. Part 3 | Tutorial of Meta-GWAS

Day 5

1. Part 1 | Phasing and imputation [Canvas]
2. Part 2 | Tutorial for Impute2
3. Part 3 | Tutorial for Beagle software

Day 6

1. Part 1 | ChIP-Seq [Canvas]
2. Part 2 | Tutorial for ChIP-Seq
3. Part 3 | Long_reads [Canvas]
4. Part 4 | Tutorial for handling long reads
5. Part 6 | orthodb
6. Part 6 | kProcessor