More general plot class for arbitrary geometry, not only sp2 #121
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…atch collection to plot the atomic structure and not only the one for sp2 systems
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The way in which we plotted geometry-related plots was specific for sp2 carbon systems, however we can easily generalize this for now by allowing to pass any other patch collection that the user may want to use.
It is still default to the sp2 case to minimize the changes, but maybe it should be established the
Nonecase as the default value?