Merge pull request galaxyproject#423 from planemo-autoupdate/workflow…

…s/amplicon/qiime2/qiime2-II-denoising Updating workflows/amplicon/qiime2/qiime2-II-denoising from 0.2 to 0.3
dianichj · Nov 26, 2024 · 6e9f186 · 6e9f186
2 parents 072161d + 9059c8e
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diff --git a/workflows/amplicon/qiime2/qiime2-II-denoising/CHANGELOG.md b/workflows/amplicon/qiime2/qiime2-II-denoising/CHANGELOG.md
@@ -1,6 +1,16 @@
 # Changelog
 
+## [0.3] 2024-11-04
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__dada2__denoise_single/qiime2__dada2__denoise_single/2023.5.0+q2galaxy.2023.5.0.2` was updated to `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__dada2__denoise_single/qiime2__dada2__denoise_single/2024.10.0+q2galaxy.2024.10.0`
+- `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__feature_table__tabulate_seqs/qiime2__feature_table__tabulate_seqs/2023.5.0+q2galaxy.2023.5.0.2` was updated to `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__feature_table__tabulate_seqs/qiime2__feature_table__tabulate_seqs/2024.10.0+q2galaxy.2024.10.0`
+- `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__metadata__tabulate/qiime2__metadata__tabulate/2023.5.0+q2galaxy.2023.5.0.2` was updated to `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__metadata__tabulate/qiime2__metadata__tabulate/2024.10.0+q2galaxy.2024.10.0`
+- `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__feature_table__summarize/qiime2__feature_table__summarize/2023.5.0+q2galaxy.2023.5.0.2` was updated to `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__feature_table__summarize/qiime2__feature_table__summarize/2024.10.0+q2galaxy.2024.10.0`
+- `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__dada2__denoise_paired/qiime2__dada2__denoise_paired/2023.5.0+q2galaxy.2023.5.0.2` was updated to `toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__dada2__denoise_paired/qiime2__dada2__denoise_paired/2024.10.0+q2galaxy.2024.10.0`
+
+## [0.2] 2024-05-23
+Fix dockstore.yml.
+
 ## [0.1] 2024-04-08
 First release.
-## [0.2] 2024-05-23
-Fix dockstore.yml.
diff --git a/.../qiime2/qiime2-II-denoising/QIIME2-IIa-denoising-and-feature-table-creation-single-end.ga b/.../qiime2/qiime2-II-denoising/QIIME2-IIa-denoising-and-feature-table-creation-single-end.ga
@@ -15,7 +15,7 @@
         }
     ],
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-    "release": "0.2",
+    "release": "0.3",
     "license": "MIT",
     "name": "QIIME2 IIa: Denoising (sequence quality control) and feature table creation (single-end)",
     "steps": {
@@ -129,7 +129,7 @@
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@@ -205,7 +205,7 @@
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@@ -214,7 +214,12 @@
                     "output_name": "representative_sequences"
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+                    "name": "__q2galaxy__GUI__section__extra_opts__"
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             "label": "Tabulate DADA2 denoised representative sequences",
             "name": "qiime2 feature-table tabulate-seqs",
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@@ -236,15 +241,15 @@
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@@ -258,7 +263,7 @@
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@@ -311,7 +316,7 @@
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diff --git a/.../qiime2/qiime2-II-denoising/QIIME2-IIb-denoising-and-feature-table-creation-paired-end.ga b/.../qiime2/qiime2-II-denoising/QIIME2-IIb-denoising-and-feature-table-creation-paired-end.ga
@@ -15,7 +15,7 @@
         }
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     "format-version": "0.1",
-    "release": "0.2",
+    "release": "0.3",
     "license": "MIT",
     "name": "QIIME2 IIb: Denoising (sequence quality control) and feature table creation (paired-end)",
     "steps": {
@@ -183,7 +183,7 @@
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+            "content_id": "toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__dada2__denoise_paired/qiime2__dada2__denoise_paired/2024.10.0+q2galaxy.2024.10.0",
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@@ -271,7 +271,7 @@
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@@ -280,7 +280,12 @@
                     "output_name": "representative_sequences"
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-            "inputs": [],
+            "inputs": [
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+                    "description": "runtime parameter for tool qiime2 feature-table tabulate-seqs",
+                    "name": "__q2galaxy__GUI__section__extra_opts__"
+                }
+            ],
             "label": "Tabulate DADA2 denoised representative sequences",
             "name": "qiime2 feature-table tabulate-seqs",
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@@ -324,7 +329,7 @@
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+                "changeset_revision": "9857be21dcaf",
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@@ -377,7 +382,7 @@
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