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Maturin #1336

Merged
merged 23 commits into from
Nov 21, 2024
Merged

Maturin #1336

merged 23 commits into from
Nov 21, 2024

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WardDeb
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@WardDeb WardDeb commented Nov 21, 2024

WIP for deepTools 4 overhaul.

@bgruening
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@WardDeb would it make sense to split up this PR in many small ones? Maybe even per tool? I guess this makes it easier to review them.

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WardDeb commented Nov 21, 2024

@WardDeb would it make sense to split up this PR in many small ones? Maybe even per tool? I guess this makes it easier to review them.

Not so sure to split them up atm (note that for this PR only bamCoverage is properly implemented, only babysteps for bamCompare, so this PR corresponds to one tool..). The number of files changed looks daunting as all the python code got moved into pydeeptools folder, but actually not that much changed.

I'll go ahead and merge this, but keep maturin separated for now. We can discuss moving up to develop next wednesday :)

@WardDeb WardDeb merged commit dd0461a into deeptools:maturin Nov 21, 2024
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