v2.0.1

We have substantially updated the STRchive website interface to be more user-friendly and informative. Citations are now available for each discrete data point, rather than associated with locus pages, to facilitate the transparency of our descriptions and conclusions. Additionally, we have added resources to allow STRchive to be maintained as a living resource, including automated literature queries and ongoing expert curation.

What's Changed

• Major website redesign by @vincerubinetti
• Genes added since the last release: MUC1, NAXE, pre-MIR7-2 by @laurelhiatt and @hdashnow
• Breaking change: an overhaul of the data format. The STRchive loci are now stored in data/STRchive-loci.json with updated field names and no csv format. See #44 #95 and #26 by @hdashnow
• Clearer data to citation associations and referencing with manubot by @vincerubinetti and @laurelhiatt
• Enhanced automated literature retrieval by @laurelhiatt
• Population frequency of "pathogenic genotypes" by @avvaruakshay and @laurelhiatt

Full Changelog: v1.2.0...v2.0.1

v1.2.0

What's Changed

New loci:

• new locus: RAI1 by @laurelhiatt in #48
• Add TAF1 XDP by @hdashnow in #43

Locus updates:

• update SCA10 GeneReview by @laurelhiatt in #30
• FGF14 update by @laurelhiatt in #29

New data added for most loci:

• updated data from recent lit by @laurelhiatt in #33
• TR-gnomAD IDs added by @hdashnow in #41
• Disease descriptions by @hdashnow in #35
• clinical disease description edits by @laurelhiatt in #42
• added TR-gnomAD and Webstr IDs by @laurelhiatt in #45
• Gene pages: add descriptions and TR-gnomAD by @hdashnow in #46
• Malacards by @laurelhiatt in #51
• gene locations taken from NBK535148, UCSC Genome Browser on Human (GR… by @laurelhiatt in #52
• Ancestry by @laurelhiatt in #50

Minor edits and fixes:

• GLS Mondo code lacked first 0 by @laurelhiatt in #31
• • fixed GARD FAME bug by @laurelhiatt in #47

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• updating AR and ARX by @laurelhiatt in #23
• Update STRchive-database.json for DAB1 by @laurelhiatt in #27
• Mondo terms added by @laurelhiatt in #28
• Add links to useful TR catalogs under Resources
• Fix TRGT bed file download links

Full Changelog: v1.0.0...v1.1.0

v1.0.0 Preprint release

This STRchive version corresponds to the preprint release

What's Changed

• Prevalence updates
• Addition of automated citation data to website
• Website formatting

PRs since last version

• Missednotypicalages by @laurelhiatt in #13
• update motif and add detail by @laurelhiatt in #15
• Prevalence recheck by @laurelhiatt in #16
• Motifsfromreview by @laurelhiatt in #19

Full Changelog: v0.2.0...v1.0.0

v0.2.0

What's Changed

• Renamed and sorted the underlying database and updated how we manage collaborative edits by @hdashnow. See https://github.com/hdashnow/STRchive/pull/12 (Note: non-backwards-compatible!)
• Major age of onset updates and more details by @laurelhiatt in https://github.com/hdashnow/STRchive/pull/8 and https://github.com/hdashnow/STRchive/pull/11
• General tidy and update to the website and plots

Full Changelog: hdashnow/STRchive@v0.1.0...v0.2.0

v0.1.0

Initial release of STRchive!

Full Changelog: https://github.com/hdashnow/STRchive/commits/v0.1.0