Upgrade to datacite v4.5 serialization from inveniosoftware #1718
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| name: Test against dandi-cli | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| schedule: | |
| - cron: '0 6 * * *' | |
| jobs: | |
| test-dandi-cli: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| NO_ET: 1 | |
| DANDI_ALLOW_LOCALHOST_URLS: 1 | |
| DANDI_TESTS_PULL_DOCKER_COMPOSE: 0 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - windows-2019 | |
| - ubuntu-latest | |
| - macos-latest | |
| python: | |
| # Use the only Python which is ATM also used by dandi-api | |
| # - 3.9 | |
| # - '3.10' | |
| - '3.11' | |
| # - '3.12' | |
| version: | |
| - master | |
| - release | |
| mode: | |
| - normal | |
| include: | |
| - os: ubuntu-latest | |
| python: 3.9 | |
| mode: dandi-devel | |
| version: master | |
| - os: ubuntu-latest | |
| python: 3.9 | |
| mode: dandi-devel | |
| version: release | |
| exclude: | |
| # Temporarily disabled due to h5py/hdf5 dependency issue | |
| # See <https://github.com/dandi/dandi-cli/pull/315> | |
| - os: windows-2019 | |
| python: 3.9 | |
| steps: | |
| - name: Set up Python ${{ matrix.python }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Update pip & install wheel | |
| run: python -m pip install --upgrade pip wheel | |
| - name: Install hdf5 (Ubuntu) | |
| if: matrix.python == '3.10' && startsWith(matrix.os, 'ubuntu') | |
| run: sudo apt-get update && sudo apt-get install -y libhdf5-dev | |
| - name: Install hdf5 (macOS) | |
| if: matrix.python == '3.10' && startsWith(matrix.os, 'macos') | |
| run: | | |
| brew install [email protected] | |
| brew link [email protected] | |
| - name: Install master branch of dandi | |
| if: ${{ matrix.version == 'master' }} | |
| run: pip install "dandi[test,extras] @ git+https://github.com/dandi/dandi-cli.git" | |
| - name: Install latest release of dandi | |
| if: ${{ matrix.version == 'release' }} | |
| run: pip install "dandi[test,extras]" | |
| - name: Set DANDI_DEVEL=1 | |
| if: matrix.mode == 'dandi-devel' | |
| run: echo DANDI_DEVEL=1 >> "$GITHUB_ENV" | |
| - name: Check out dandischema | |
| uses: actions/checkout@v4 | |
| with: | |
| # Fetch all commits so that versioningit will return something | |
| # compatible with semantic-version | |
| fetch-depth: 0 | |
| path: dandischema | |
| - name: Install dandischema | |
| run: pip install . | |
| working-directory: dandischema | |
| - name: Build dandi-api image with this version of dandischema | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: | | |
| docker build \ | |
| -t dandiarchive/dandiarchive-api \ | |
| -f tools/api-with-schema.Dockerfile \ | |
| . | |
| working-directory: dandischema | |
| - name: Run dandi-cli tests | |
| run: python -m pytest -s -v --pyargs dandi |