add ncbi-datasets #5
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| name: Build and push container image | |
| on: | |
| # Trigger the workflow when changes to image/ folder are | |
| # pushed to the main branch | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - "image/**" | |
| # Trigger the workflow manually | |
| workflow_dispatch: | |
| jobs: | |
| build-and-push: | |
| runs-on: ubuntu-latest | |
| steps: | |
| # For biggish images, github actions runs out of disk space. | |
| # So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use | |
| # https://github.com/actions/virtual-environments/issues/2606#issuecomment-772683150 | |
| # and https://github.com/easimon/maximize-build-space/blob/b4d02c14493a9653fe7af06cc89ca5298071c66e/action.yml#L104 | |
| # This gives us a total of about 52G of free space, which should be enough for now | |
| - name: cleanup disk space | |
| run: | | |
| sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc | |
| df -h | |
| - name: Checkout files in repo | |
| uses: actions/checkout@main | |
| - name: Build and push the image to quay.io | |
| id: build-push | |
| uses: jupyterhub/repo2docker-action@master | |
| with: | |
| # Make sure username & password/token pair matches your registry credentials | |
| DOCKER_USERNAME: ${{ secrets.QUAY_USERNAME }} | |
| DOCKER_PASSWORD: ${{ secrets.QUAY_PASSWORD }} | |
| DOCKER_REGISTRY: "quay.io" | |
| # Uncomment and modify the following line with your image name, otherwise no push will happen | |
| IMAGE_NAME: "2i2c/bioinfo-image" | |
| # Tell repo2docker which subdirectory to examine | |
| # ref: https://repo2docker.readthedocs.io/en/latest/usage.html#cmdoption-jupyter-repo2docker-subdir | |
| REPO2DOCKER_EXTRA_ARGS: "--subdir image" | |
| # Lets us monitor disks getting full as images get bigger over time | |
| - name: Show how much disk space is left | |
| run: df -h |