Chromosome Tool

This is tools to re-assemble chromosome fragments

Usage

requirement

• java 8

Cmd

Just download the jar from bin file.

Chromosome tools 0.1
Usage: java -jar <path-to-your-jar> [options]

  -i, --in <value>   in is the absolute path of the input FASTA file.
  -o, --out <value>  out is the absolute path of the output file including the result.
  --help             prints this usage text

Doc

No~ There are not many codes. Please read it...

Development

requirement

• java 8
• sbt 1.0+

How to run tests

• run sbt test

How to package a jar

• run sbt assembly

TODO List

• Performance Test: lack of data. Cannot done before because of misunderstanding. Now fixed.
• Support multi-thread Tested the boundary of 50 size and 1000 length in the happiest way. It seems multi-thread not needed according to the test result.