Merge branch 'main' into development

.github/scripts/blender_pyversion_lookup.py

@@ -27,7 +27,6 @@
     "2.93": '3.9',
     "3.3": "3.10",
     "3.6": "3.10",
-
 }
 
 if __name__ == "__main__":

VERSION

@@ -1 +1 @@
-2.0.7-alpha
+2.0.7

docs/src/changelog.rst

@@ -2,6 +2,28 @@
 Changelog
 #########
 
+******************
+2.0.7 (08-17-2021)
+******************
+
+This is a maintenance release which improves compatibility with ``blender`` add-on development ideals along with some fixes.
+
+**New Features**:
+
+- CI and packaging using Github Actions
+- Make runtime errors more informative
+- Preliminary support for exporting to COMSOL
+- BlendGAMer support for Blender 2.93LTS
+
+**Fixes**:
+
+- Normal smooth no longer applies on the boundaries of a mesh
+- Resolves an issue where computing normals fails due to zero-area faces
+
+**Other**:
+
+- Update versions of dependencies (Eigen, Tetgen, Pybind11, Google-Test)
+
 ******************
 2.0.6 (02-25-2020)
 ******************
@@ -87,4 +109,4 @@ This is a maintenance release which improves compatibility with ``blender`` add-
 
 **New Features**:
 
-- Stable beta release! Compilation is supported on major operating systems (:pr:`16`).
+- Stable beta release! Compilation is supported on major operating systems (:pr:`16`).

pygamer/src/pygamer.cpp

@@ -116,6 +116,21 @@ PYBIND11_MODULE(pygamer, pygamer) {
         )delim"
     );
 
+    pygamer.def("readPDB_distgrid", &readPDB_distgrid,
+        py::arg("filename"),
+        py::arg("radius") = 1.4,
+        R"delim(
+            Compute the Connolly surface using a distance grid based strategy
+
+            Args:
+                filename (:py:class:`str`): PDB file to read.
+                radius (:py:class:`float`): Radius in Angstroms of ball to roll over surface.
+            
+            Returns:
+                :py:class:`surfacemesh.SurfaceMesh`: Meshed object.
+        )delim"
+    );
+
     pygamer.def("readPDB_gauss", &readPDB_gauss,
         py::arg("filename"),
         py::arg("blobbyness") = -0.2,

tools/blendgamer/src/colormap.py

@@ -38,7 +38,6 @@
     "PRGN": plt.cm.PRGn,
 }
 
-
 def curveToData(crv, context):
     """
     Helper function to take a curvature object and return smoothed data.
@@ -218,6 +217,7 @@ def dataToVertexColor(crv, context, showplot=False, saveplot=False):
 
     # Add axis for colorbar and plot it
     ax = fig.add_axes([0.75, 0.05, 0.05, 0.9])
+
     cb = mpl.colorbar.Colorbar(
         ax, cmap=curvature_map, norm=norm, orientation="vertical"
     )