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New implementation of the nectarchain module #82

Merged
merged 130 commits into from
Jan 22, 2024
Merged

New implementation of the nectarchain module #82

merged 130 commits into from
Jan 22, 2024

Commits on Sep 13, 2023

  1. clean commit history : 

    -update SPE fit parameters initialization
following updates of the ctapipe extractors
-improve the limits of generated charge histogram plots
    guillaume.grolleron committed Sep 13, 2023
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  2. test script

    guillaume.grolleron committed Sep 13, 2023
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  3. add method to sort WaveformsContainer 

    and ChargesContainer following events_id
    guillaume.grolleron committed Sep 13, 2023
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  4. -waveformContainer contructor from event list

    guillaume.grolleron committed Sep 13, 2023
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  5. user script for test ggroller

    guillaume.grolleron committed Sep 13, 2023
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  6. change values of pp and n in fit parameters file 

     by median
    guillaume.grolleron committed Sep 13, 2023
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  7. improve test

    guillaume.grolleron committed Sep 13, 2023
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  8. repare test

    guillaume.grolleron committed Sep 13, 2023
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  9. reduce pvalue digit in label

    guillaume.grolleron committed Sep 13, 2023
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  10. -add time counter to SPE fit

    guillaume.grolleron committed Sep 13, 2023
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  11. add possibility to freez parameters into minuit

    guillaume.grolleron committed Sep 13, 2023
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  12. begin : redesign of the SPE fit class to speed up

    guillaume.grolleron committed Sep 13, 2023
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  13. new skeleton for the calibration pipeline : 

    -container module for the data structure (to be extend)
-makers module to make the computation of calibration quantities
 on the data structure
    guillaume.grolleron committed Sep 13, 2023
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  14. mothers class for the maker module

    guillaume.grolleron committed Sep 13, 2023
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  15. mother class for the gain makers

    guillaume.grolleron committed Sep 13, 2023
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  16. unchanged modeuls for the new structure

    guillaume.grolleron committed Sep 13, 2023
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  17. FlatFieldSPEMaker implementation

    guillaume.grolleron committed Sep 13, 2023
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  18. photostatistic maker (not re-implemented yet)

    guillaume.grolleron committed Sep 13, 2023
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  19. implementation of the FFSPE fit for single run 

    with n and p' fixed
    guillaume.grolleron committed Sep 13, 2023
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  20. implementation of FF SPE gain maker 

    at nominal voltage
+ update of user script
    guillaume.grolleron committed Sep 13, 2023
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  21. bugfix 

    user script updated : FF SPE at VVH voltage (ie for single run)
    guillaume.grolleron committed Sep 13, 2023
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  22. update for nominal voltage data FF SPE fit from HHV 

    pre-computed one
    guillaume.grolleron committed Sep 13, 2023
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  23. -bugfix 

    update for nominal FF SPE fit
    guillaume.grolleron committed Sep 13, 2023
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  24. put I/O method in mother class

    guillaume.grolleron committed Sep 13, 2023
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  25. add low gain in contructor (only high gain before)

    guillaume.grolleron committed Sep 13, 2023
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  26. typo bugfiox

    guillaume.grolleron committed Sep 13, 2023
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  27. move gain utils in one single folder

    guillaume.grolleron committed Sep 13, 2023
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  28. bugfix nominal voltage fit 

    the fitting process continues although the initial
 parameters computation failed
    guillaume.grolleron committed Sep 13, 2023
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  29. Photostatistic implementation done

    guillaume.grolleron committed Sep 13, 2023
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  30. cleaning : import, type, etc

    guillaume.grolleron committed Sep 13, 2023
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  31. remove old SPE fit implementation

    guillaume.grolleron committed Sep 13, 2023
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  32. makers : core module enhancement 

     (docstrings, unit test)
    guillaume.grolleron committed Sep 13, 2023
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  33. cleaning

    guillaume.grolleron committed Sep 13, 2023
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  34. moving container and makers in 

     top of calibration directory
    guillaume.grolleron committed Sep 13, 2023
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  35. folder restructuring

    guillaume.grolleron committed Sep 13, 2023
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  36. cleaning after the restructuration

    guillaume.grolleron committed Sep 13, 2023
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  37. unit test for chargecontainer

    guillaume.grolleron committed Sep 13, 2023
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  38. test extractor utlis

    guillaume.grolleron committed Sep 13, 2023
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  39. unit test CalibrationMaker and GainMakers

    guillaume.grolleron committed Sep 13, 2023
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  40. unit test flatfieldSPEMakers

    guillaume.grolleron committed Sep 13, 2023
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  41. unit test implementation follow up

    guillaume.grolleron committed Sep 13, 2023
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  42. mv wavefomrs in makers

    guillaume.grolleron committed Sep 13, 2023
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Commits on Sep 14, 2023

  1. code into WavefomContainers split into 2 parts : one for the data for… 

    …mat,

the other for the computation
    guillaume.grolleron committed Sep 14, 2023
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  2. move charge container into makers module

    guillaume.grolleron committed Sep 14, 2023
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  3. creation of mother class to charge and waveform container

    guillaume.grolleron committed Sep 14, 2023
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  4. follow up : factorisation waveforms and chargs Makers

    guillaume.grolleron committed Sep 14, 2023
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  5. display module

    guillaume.grolleron committed Sep 14, 2023
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  6. finalisation of the refactorisation of the waveformsMaker 

    chargesMaker implementation
    guillaume.grolleron committed Sep 14, 2023
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Commits on Sep 15, 2023

  1. ChargesContainers I/O 

    cleaning
unit test for WaveformsMaker and ChargesMaker
    guillaume.grolleron committed Sep 15, 2023
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  2. update calibration class following COntainers changes

    guillaume.grolleron committed Sep 15, 2023
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  3. bugfix according to unit tests

    guillaume.grolleron committed Sep 15, 2023
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  4. docstrings container + unit test

    guillaume.grolleron committed Sep 15, 2023
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  5. make container module visible

    guillaume.grolleron committed Sep 15, 2023
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  6. small bugfix + fix unit test for makers

    guillaume.grolleron committed Sep 15, 2023
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Commits on Sep 17, 2023

  1. docstrings makers module

    guillaume.grolleron committed Sep 17, 2023
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  2. follow pre-commit hook

    guillaume.grolleron committed Sep 17, 2023
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  3. set Dirac import into methods which need it

    guillaume.grolleron committed Sep 17, 2023
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Commits on Oct 16, 2023

  1. first step to reimplement following ctapipe 

     Tool and Components framework
    guillaume.grolleron committed Oct 16, 2023
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Commits on Oct 23, 2023

  1. -removed the I/O method for containers 

        -> now we will use ctapipe HDF5TableWriter and Reader
-creation of recursive containers
    guillaume.grolleron committed Oct 23, 2023
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  2. -adapt charges extraction makers and waveform extraction 

    makers with the ctapipe.Tool framework
    guillaume.grolleron committed Oct 23, 2023
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  3. -creation of the component module, which inherits from ctapipe.component 

    -implementation of the NectarCAMComponent, the base class for nectrachain components,
- implementation of the ChargesComponent and WaveformsComponent
    guillaume.grolleron committed Oct 23, 2023
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  4. -preliminary tuto script to extract charges 

    or waveforms using Tool and Component classes
    guillaume.grolleron committed Oct 23, 2023
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  5. renaming code name for gain 

    computation (makers->Component)
    guillaume.grolleron committed Oct 23, 2023
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  6. move SPE code in component module

    guillaume.grolleron committed Oct 23, 2023
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Commits on Oct 24, 2023

  1. move SPE algo in utlis

    guillaume.grolleron committed Oct 24, 2023
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  2. renaming spe module

    guillaume.grolleron committed Oct 24, 2023
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Commits on Oct 26, 2023

  1. changement yaml parameters spe location

    guillaume.grolleron committed Oct 26, 2023
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Commits on Oct 30, 2023

  1. mv spe algo in component main folder

    guillaume.grolleron committed Oct 30, 2023
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  2. move utils outside of the sub-modules

    guillaume.grolleron committed Oct 30, 2023
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Commits on Nov 5, 2023

  1. charge and waveforms extraction with ctapip Tool

    guillaume.grolleron committed Nov 5, 2023
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  2. container for charges and waveforms

    guillaume.grolleron committed Nov 5, 2023
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  3. fast eventsource reader (30% faster)

    guillaume.grolleron committed Nov 5, 2023
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  4. gain container to store interesting values 

     computed from gain calibration
    guillaume.grolleron committed Nov 5, 2023
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  5. for spe algorithm Component

    guillaume.grolleron committed Nov 5, 2023
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  6. calibration module

    guillaume.grolleron committed Nov 5, 2023
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  7. calibration module : SPE fit implementation

    guillaume.grolleron committed Nov 5, 2023
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  8. add useful method

    guillaume.grolleron committed Nov 5, 2023
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  9. utils for nectarchain

    guillaume.grolleron committed Nov 5, 2023
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  10. script to load waveforms and extract charge updated

    guillaume.grolleron committed Nov 5, 2023
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Commits on Nov 8, 2023

  1. Merge branch 'master' into new_struct

    guillaume.grolleron committed Nov 8, 2023
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  2. renaming code name for gain 

    computation (makers->Component)
    guillaume.grolleron committed Nov 8, 2023
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  3. move SPE code in component module

    guillaume.grolleron committed Nov 8, 2023
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  4. move SPE algo in utlis

    guillaume.grolleron committed Nov 8, 2023
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  5. renaming spe module

    guillaume.grolleron committed Nov 8, 2023
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  6. changement yaml parameters spe location

    guillaume.grolleron committed Nov 8, 2023
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  7. mv spe algo in component main folder

    guillaume.grolleron committed Nov 8, 2023
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  8. move utils outside of the sub-modules

    guillaume.grolleron committed Nov 8, 2023
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  9. charge and waveforms extraction with ctapip Tool

    guillaume.grolleron committed Nov 8, 2023
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  10. container for charges and waveforms

    guillaume.grolleron committed Nov 8, 2023
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  11. fast eventsource reader (30% faster)

    guillaume.grolleron committed Nov 8, 2023
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  12. gain container to store interesting values 

     computed from gain calibration
    guillaume.grolleron committed Nov 8, 2023
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  13. for spe algorithm Component

    guillaume.grolleron committed Nov 8, 2023
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  14. calibration module

    guillaume.grolleron committed Nov 8, 2023
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  15. calibration module : SPE fit implementation

    guillaume.grolleron committed Nov 8, 2023
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  16. add useful method

    guillaume.grolleron committed Nov 8, 2023
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  17. utils for nectarchain

    guillaume.grolleron committed Nov 8, 2023
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  18. script to load waveforms and extract charge updated

    guillaume.grolleron committed Nov 8, 2023
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  19. Merge branch 'new_structure' into new_struct

    guillaume.grolleron committed Nov 8, 2023
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  20. cleaning

    guillaume.grolleron committed Nov 8, 2023
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Commits on Nov 18, 2023

  1. container namesape + other

    guillaume.grolleron committed Nov 18, 2023
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  2. waveforms from hdf5 method

    guillaume.grolleron committed Nov 18, 2023
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  3. SPE fit for flatfirld runs implementation

    guillaume.grolleron committed Nov 18, 2023
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  4. start of reimplementatuion of phtotstat method

    guillaume.grolleron committed Nov 18, 2023
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Commits on Nov 20, 2023

  1. follow up photostat implementation

    guillaume.grolleron committed Nov 20, 2023
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Commits on Nov 23, 2023

  1. clean way to manage the work done on reduced 

    part of the raw data (with max_events parameter)
    guillaume.grolleron committed Nov 23, 2023
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  2. forgotten in last commit..

    guillaume.grolleron committed Nov 23, 2023
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  3. photostatistic re-implemented

    guillaume.grolleron committed Nov 23, 2023
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  4. same

    guillaume.grolleron committed Nov 23, 2023
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  5. typo changes

    guillaume.grolleron committed Nov 23, 2023
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  6. circular import bugfix

    guillaume.grolleron committed Nov 23, 2023
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  7. imprve log

    guillaume.grolleron committed Nov 23, 2023
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  8. bugfix output filename

    guillaume.grolleron committed Nov 23, 2023
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  9. bugfix I/O + maxevents read written now in output file 

    + data management with max_events parameter
    guillaume.grolleron committed Nov 23, 2023
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Commits on Nov 24, 2023

  1. some bugfix

    guillaume.grolleron committed Nov 24, 2023
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  2. cleaning and improvement of the data management

    guillaume.grolleron committed Nov 24, 2023
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  3. updates of scripts

    guillaume.grolleron committed Nov 24, 2023
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  4. remove old unit test

    guillaume.grolleron committed Nov 24, 2023
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Commits on Nov 28, 2023

  1. update runs of interest

    guillaume.grolleron committed Nov 28, 2023
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  2. bugfix : 

    -find SPE data
-containers data with maxevents
    guillaume.grolleron committed Nov 28, 2023
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  3. load Containers : now if it is splited in slices, 

    will return a generator to only
 load the slices one by one during execution
 -> reduce the RAM needed
    guillaume.grolleron committed Nov 28, 2023
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  4. bugfix computation of convergence rate

    guillaume.grolleron committed Nov 28, 2023
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Commits on Dec 1, 2023

  1. -add classes to perform SPE fit directly 

    at nominal voltage (config files)
-change SPE fit plotting matplotlib -> pyqtgraph
 to speed up the plots generation
    guillaume.grolleron committed Dec 1, 2023
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Commits on Jan 12, 2024

  1. -ignore png files 

    -bugfix : check valididty of container before to write when
finishing component
    guillaume.grolleron committed Jan 12, 2024
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  2. update scripts

    guillaume.grolleron committed Jan 12, 2024
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  3. tuto for : 

    -creation of your own component and tool
-SPE tools use
-exctraction of waveforms and chgares with tools and components.
    guillaume.grolleron committed Jan 12, 2024
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Commits on Jan 15, 2024

  1. -fix issue to access component defined outside 

    of the nectarchain module
-typo fix
-overwrite argument of tool better defined
    guillaume.grolleron committed Jan 15, 2024
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  2. bugfix : issue mentioned by @jlenain in cta-observatory#82. 

    Now the read of a container will always return a generator,
which can be ciomposed by only one item.
    guillaume.grolleron committed Jan 15, 2024
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Commits on Jan 19, 2024

  1. update with pre-commit hooks

    guillaume.grolleron committed Jan 19, 2024
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  2. ignore notebooks

    guillaume.grolleron committed Jan 19, 2024
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  3. rm notebook

    guillaume.grolleron committed Jan 19, 2024
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