Fixing multiprocessing issue and minor bugfixes (#108) #266
Workflow file for this run
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| name: CI | |
| # by not building all branches on push, we avoid the duplicated builds in PRs | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - '**' | |
| pull_request: | |
| env: | |
| NUMBA_NUM_THREADS: 1 | |
| MPLBACKEND: Agg | |
| PYTEST_ADDOPTS: --color=yes | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| name: Lint | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| - name: Runs pre-commit hooks | |
| uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --files $(git diff origin/main --name-only) | |
| tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| ctapipe-version: [v0.19.3] | |
| install-method: [ "mamba", "pip" ] | |
| defaults: | |
| run: | |
| # We need login shells (-l) for micromamba to work. | |
| shell: bash -leo pipefail {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set Python version | |
| env: | |
| PYTHON_VERSION: ${{ matrix.python-version }} | |
| run: | | |
| sed -i -e "s/- python=.*/- python=$PYTHON_VERSION/g" environment.yml | |
| - name: Mamba setup | |
| if: matrix.install-method == 'mamba' | |
| uses: mamba-org/provision-with-micromamba@v15 | |
| with: | |
| environment-name: "ci" | |
| environment-file: environment.yml | |
| - name: Python setup | |
| if: matrix.install-method == 'pip' | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| check-latest: true | |
| - name: Install dependencies | |
| env: | |
| CTAPIPE_VERSION: ${{ matrix.ctapipe-version }} | |
| run: | | |
| python --version | |
| echo "Installing additional pip packages" | |
| # we install ctapipe using pip to be able to select any commit, e.g. the current master | |
| pip install \ | |
| "git+https://github.com/cta-observatory/ctapipe@$CTAPIPE_VERSION" \ | |
| pytest-cov | |
| echo "pip install -e ." | |
| pip install -e . | |
| - name: Tests | |
| run: | | |
| pytest --cov=nectarchain --cov-report=xml | |
| - uses: codecov/codecov-action@v3 |