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crisprVerse · Oct 5, 2023 · ed28635 · ed28635
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diff --git a/docs/DualBarcodesWithDiagnostics_8hpp.html → ...arcodesPairedEndWithDiagnostics_8hpp.html b/docs/DualBarcodesWithDiagnostics_8hpp.html → ...arcodesPairedEndWithDiagnostics_8hpp.html
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-<title>kaori: kaori/handlers/DualBarcodesWithDiagnostics.hpp File Reference</title>
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-  <div class="headertitle"><div class="title">DualBarcodesWithDiagnostics.hpp File Reference</div></div>
+  <div class="headertitle"><div class="title">DualBarcodesPairedEndWithDiagnostics.hpp File Reference</div></div>
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 <div class="contents">
 
 <p>Process dual barcodes with extra diagnostics.  
 <a href="#details">More...</a></p>
 
-<p><a href="DualBarcodesWithDiagnostics_8hpp_source.html">Go to the source code of this file.</a></p>
+<p><a href="DualBarcodesPairedEndWithDiagnostics_8hpp_source.html">Go to the source code of this file.</a></p>
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-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Handler for dual barcodes with extra diagnostics.  <a href="classkaori_1_1DualBarcodesWithDiagnostics.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classkaori_1_1DualBarcodesPairedEndWithDiagnostics.html">kaori::DualBarcodesPairedEndWithDiagnostics&lt; max_size &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Handler for dual barcodes with extra diagnostics.  <a href="classkaori_1_1DualBarcodesPairedEndWithDiagnostics.html#details">More...</a><br /></td></tr>
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diff --git a/...lBarcodesWithDiagnostics_8hpp_source.html → ...PairedEndWithDiagnostics_8hpp_source.html b/...lBarcodesWithDiagnostics_8hpp_source.html → ...PairedEndWithDiagnostics_8hpp_source.html
diff --git a/docs/DualBarcodes_8hpp.html → docs/DualBarcodesPairedEnd_8hpp.html b/docs/DualBarcodes_8hpp.html → docs/DualBarcodesPairedEnd_8hpp.html
@@ -5,7 +5,7 @@
 <meta http-equiv="X-UA-Compatible" content="IE=11"/>
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-<title>kaori: kaori/handlers/DualBarcodes.hpp File Reference</title>
+<title>kaori: kaori/handlers/DualBarcodesPairedEnd.hpp File Reference</title>
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 <script type="text/javascript" src="jquery.js"></script>
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@@ -78,22 +78,22 @@
   <div class="summary">
 <a href="#nested-classes">Classes</a> &#124;
 <a href="#namespaces">Namespaces</a>  </div>
-  <div class="headertitle"><div class="title">DualBarcodes.hpp File Reference</div></div>
+  <div class="headertitle"><div class="title">DualBarcodesPairedEnd.hpp File Reference</div></div>
 </div><!--header-->
 <div class="contents">
 
 <p>Process dual barcodes.  
 <a href="#details">More...</a></p>
 
-<p><a href="DualBarcodes_8hpp_source.html">Go to the source code of this file.</a></p>
+<p><a href="DualBarcodesPairedEnd_8hpp_source.html">Go to the source code of this file.</a></p>
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 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a id="nested-classes" name="nested-classes"></a>
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-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classkaori_1_1DualBarcodes.html">kaori::DualBarcodes&lt; max_size &gt;</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Handler for dual barcodes.  <a href="classkaori_1_1DualBarcodes.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classkaori_1_1DualBarcodesPairedEnd.html">kaori::DualBarcodesPairedEnd&lt; max_size &gt;</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Handler for dual barcodes.  <a href="classkaori_1_1DualBarcodesPairedEnd.html#details">More...</a><br /></td></tr>
 <tr class="separator:"><td class="memSeparator" colspan="2">&#160;</td></tr>
-<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structkaori_1_1DualBarcodes_1_1Options.html">kaori::DualBarcodes&lt; max_size &gt;::Options</a></td></tr>
-<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Optional parameters for <code><a class="el" href="classkaori_1_1SingleBarcodeSingleEnd.html" title="Handler for single-end single barcodes.">SingleBarcodeSingleEnd</a></code>.  <a href="structkaori_1_1DualBarcodes_1_1Options.html#details">More...</a><br /></td></tr>
+<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">struct &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="structkaori_1_1DualBarcodesPairedEnd_1_1Options.html">kaori::DualBarcodesPairedEnd&lt; max_size &gt;::Options</a></td></tr>
+<tr class="memdesc:"><td class="mdescLeft">&#160;</td><td class="mdescRight">Optional parameters for <code><a class="el" href="classkaori_1_1DualBarcodesPairedEnd.html" title="Handler for dual barcodes.">DualBarcodesPairedEnd</a></code>.  <a href="structkaori_1_1DualBarcodesPairedEnd_1_1Options.html#details">More...</a><br /></td></tr>
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