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Bisaloo committed Oct 22, 2024
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6 changes: 3 additions & 3 deletions Epidemiology.md
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functions to check for missing data, validate dates, and ensure that variables
are in the correct format.
- `r pkg("epiCleanr")`: A collection of data cleaning utilities for
epidemiological data.
epidemiological data.
- `r pkg("epidm")`: Contains utilities and functions for the cleaning,
processing and management of patient level public health data for surveillance
and analysis held by the UK Health Security Agency, UKHSA.
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within-host viral dynamics, transportation, population structure), alone or
taken together, to create complex but relatively intuitive epidemiological
simulations.
- `r pkg("epiworldR")` and its Shiny interface `r pkg("epiworldRShiny")`: A
- `r pkg("epiworldR")` and its Shiny interface `r pkg("epiworldRShiny")`: A
framework for agent-based modelling with a C++ backend for high performance.

#### Digital Epidemiology
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[Miller (2012)](https://doi.org/10.1007/s11538-012-9749-6).
- `r pkg("shinySIR")`: A Shiny graphical interface to interactively explore
simple SIR models. Users can also provide their own ODEs.
- `r pkg("EpiDynamics")`: A collection of SEIR, SIR, and SIS models with
- `r pkg("EpiDynamics")`: A collection of SEIR, SIR, and SIS models with
several variations (demography, age groups, risk groups, etc.)

### Transmission tree reconstruction
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