Update info for 2.8.0 release

CMakeLists.txt

@@ -7,9 +7,9 @@ project(PARTMC Fortran C)
 
 set(PACKAGE_BUGREPORT "[email protected]")
 set(PACKAGE_NAME "PartMC")
-set(PACKAGE_STRING "PartMC 2.7.0")
+set(PACKAGE_STRING "PartMC 2.8.0")
 set(PACKAGE_TARNAME "partmc")
-set(PACKAGE_VERSION "2.7.0")
+set(PACKAGE_VERSION "2.8.0")
 
 ######################################################################
 # options

ChangeLog.md

@@ -1,3 +1,21 @@
+2.8.0 - 2024-02-23
+
+  * Add `aero_component` for tracking particle source information (Jeff Curtis).
+
+  * Add weight class selection for each aerosol source to multiple sources in a
+    single weight class (Jeff Curtis).
+
+  * Add option to avoid sampling particles that are a certain number of
+    standard deviations from the mean using a sampling timescale
+    (Jeff Curtis).
+
+  * Add preprocessor flag for WRF-PartMC specific variables and code 
+    (`PMC_USE_WRF`) (Jeff Curtis).
+
+  * Fix MPI bug causing CI failure (Sylwester Arabas and Jeff Curtis).
+
+  * Fix particle reweighting when using CAMP (Jeff Curtis). 
+
 2.7.0 - 2023-08-11
 
   * Add support for SUNDIALS 6+ (Alex Hirzel).

README.md

@@ -5,16 +5,16 @@ PartMC: Particle-resolved Monte Carlo code for atmospheric aerosol simulation
 
 [![Latest version](https://img.shields.io/github/tag/compdyn/partmc.svg?label=version)](https://github.com/compdyn/partmc/blob/master/ChangeLog.md) [![Docker build status](https://img.shields.io/docker/automated/compdyn/partmc.svg)](https://hub.docker.com/r/compdyn/partmc/builds/) [![Github Actions Status](https://github.com/compdyn/partmc/workflows/CI/badge.svg?branch=master)](https://github.com/compdyn/partmc/actions/workflows/main.yml) [![License](https://img.shields.io/github/license/compdyn/partmc.svg)](https://github.com/compdyn/partmc/blob/master/COPYING) [![DOI](https://zenodo.org/badge/24058992.svg)](https://zenodo.org/badge/latestdoi/24058992)
 
-Version 2.7.0  
-Released 2023-08-11
+Version 2.8.0  
+Released 2024-02-23
 
 **Source:** <https://github.com/compdyn/partmc>
 
 **Homepage:** <http://lagrange.mechse.illinois.edu/partmc/>
 
-**Cite as:** M. West, N. Riemer, J. Curtis, M. Michelotti, and J. Tian (2023) PartMC, [![version](https://img.shields.io/github/release/compdyn/partmc.svg?label=version)](https://github.com/compdyn/partmc), [![DOI](https://zenodo.org/badge/24058992.svg)](https://zenodo.org/badge/latestdoi/24058992)
+**Cite as:** M. West, N. Riemer, J. Curtis, M. Michelotti, and J. Tian (2024) PartMC, [![version](https://img.shields.io/github/release/compdyn/partmc.svg?label=version)](https://github.com/compdyn/partmc), [![DOI](https://zenodo.org/badge/24058992.svg)](https://zenodo.org/badge/latestdoi/24058992)
 
-Copyright (C) 2005-2022 Nicole Riemer and Matthew West  
+Copyright (C) 2005-2024 Nicole Riemer and Matthew West  
 Portions copyright (C) Andreas Bott, Richard Easter, Jeffrey Curtis,
 Matthew Michelotti, and Jian Tian  
 Licensed under the GNU General Public License version 2 or (at your
@@ -184,12 +184,12 @@ Installation
 
 2. Unpack PartMC:
 
-        tar xzvf partmc-2.7.0.tar.gz
+        tar xzvf partmc-2.8.0.tar.gz
 
 3. Change into the main PartMC directory (where this README file is
    located):
 
-        cd partmc-2.7.0
+        cd partmc-2.8.0
 
 4. Make a directory called `build` and change into it:
 

doc/Doxyfile

@@ -38,7 +38,7 @@ PROJECT_NAME           = PartMC
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 2.7.0
+PROJECT_NUMBER         = 2.8.0
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a

doc/Makefile

@@ -1,5 +1,5 @@
 
-VERSION = 2.7.0
+VERSION = 2.8.0
 
 GRAPHVIZ_FILE = partmc_modules.gv
 GRAPHVIZ_PDF = $(patsubst %.gv,%.pdf,$(GRAPHVIZ_FILE))

src/Makefile.wrf_partmc

@@ -74,7 +74,8 @@ pmc: $(PMC_MODULES)
 clean:
 	@ echo 'use the clean script'
 
-# DEPENDENCIES : only dependencies after this line (don't remove the word DEPENDENCIES)
+# DEPENDENCIES : only dependencies after this line (don't remove the word \
+     DEPENDENCIES)
 
 aero_binned.o: bin_grid.o aero_particle.o spec_file.o \
      util.o aero_dist.o mpi.o aero_data.o
@@ -115,8 +116,8 @@ aero_weight_array.o: util.o constants.o rand.o spec_file.o \
 
 bin_grid.o: constants.o util.o spec_file.o mpi.o netcdf.o
 
-camp_interface.o: aero_data.o aero_state.o aero_particle.o constants.o gas_data.o \
-     gas_state.o util.o
+camp_interface.o: aero_data.o aero_state.o aero_particle.o constants.o \
+     gas_data.o gas_state.o util.o
 
 chamber.o: aero_data.o constants.o env_state.o spec_file.o
 
@@ -156,7 +157,8 @@ coagulation.o: bin_grid.o aero_data.o util.o env_state.o \
 coagulation_dist.o: bin_grid.o aero_data.o util.o env_state.o \
      aero_state.o coagulation.o mpi.o
 
-condense.o: aero_state.o env_state.o aero_data.o util.o aero_particle.o constants.o
+condense.o: aero_state.o env_state.o aero_data.o util.o aero_particle.o \
+     constants.o
 
 constants.o:
 

src/aero_particle.F90

@@ -919,7 +919,8 @@ subroutine aero_particle_coagulate(aero_particle_1, &
     aero_particle_new%weight_class = 0
     n_swbands = size(aero_particle_1%absorb_cross_sect)
     call ensure_real_array_size(aero_particle_new%absorb_cross_sect, n_swbands)
-    call ensure_real_array_size(aero_particle_new%scatter_cross_sect, n_swbands)
+    call ensure_real_array_size(aero_particle_new%scatter_cross_sect, &
+         n_swbands)
     call ensure_real_array_size(aero_particle_new%asymmetry, n_swbands)
     call ensure_complex_array_size(aero_particle_new%refract_shell, n_swbands)
     call ensure_complex_array_size(aero_particle_new%refract_core, n_swbands)

src/bin_grid.F90

@@ -186,7 +186,8 @@ logical function bin_grid_contains(bin_grid, i_bin, val)
     call assert_msg(828875607, bin_grid_size(bin_grid) >= 0, "bin_grid not " &
          // "created.")
     call assert_msg(454111488, 0 <= i_bin .and. &
-         i_bin <= bin_grid_size(bin_grid) + 1, "i_bin not a valid bin in bin_grid")
+         i_bin <= bin_grid_size(bin_grid) + 1, "i_bin not a valid bin in " &
+         // "bin_grid")
 
     bin_grid_contains = .false.
 

src/env_state.F90

@@ -550,8 +550,8 @@ subroutine env_state_output_netcdf(env_state, ncid)
          unit="m", standard_name="bottom_altitude")
     call pmc_nc_write_real(ncid, env_state%z_max, "top_boundary_altitude", &
          unit="m", standard_name="top_altitude")
-    call pmc_nc_write_real(ncid, env_state%inverse_density, "inverse_density", &
-         unit="m3kg-1", standard_name="inverse_density")
+    call pmc_nc_write_real(ncid, env_state%inverse_density, &
+         "inverse_density", unit="m3kg-1", standard_name="inverse_density")
     call pmc_nc_write_real(ncid, env_state%cell_volume, "cell_volume", &
          unit="m3", standard_name="cell_volume")
     call pmc_nc_write_integer(ncid,env_state%cell_ix,"x_index", &

src/mosaic.F90

@@ -525,11 +525,12 @@ end subroutine aerosol_optical
     ! has specific ordering requirements
     do i_part = aero_state_n_part(aero_state),1,-1
 #ifdef PMC_USE_MOSAIC_MULTI_OPT
-       aero_state%apa%particle(i_part)%absorb_cross_sect = (ext_cross(i_part,:) &
-            - scat_cross(i_part,:)) / 1d4                       ! (m^2)
+       aero_state%apa%particle(i_part)%absorb_cross_sect = &
+            (ext_cross(i_part,:) - scat_cross(i_part,:)) / 1d4 ! (m^2)
        aero_state%apa%particle(i_part)%scatter_cross_sect = &
             scat_cross(i_part,:) / 1d4 ! (m^2)
-       aero_state%apa%particle(i_part)%asymmetry = asym_particle(i_part,:) ! (1)
+       aero_state%apa%particle(i_part)%asymmetry = &
+            asym_particle(i_part,:) ! (1)
        aero_state%apa%particle(i_part)%refract_shell = &
             cmplx(ri_shell_a(i_part,:), kind=dc) ! (1)
        aero_state%apa%particle(i_part)%refract_core =&

src/output.F90

@@ -82,7 +82,7 @@ module pmc_output
 #endif
 
   !> PartMC verson number.
-  character(len=100), parameter :: PARTMC_VERSION = "2.7.0"
+  character(len=100), parameter :: PARTMC_VERSION = "2.8.0"
 
   !> Type code for undefined or invalid output.
   integer, parameter :: OUTPUT_TYPE_INVALID = 0

src/rand.F90

@@ -452,7 +452,9 @@ end function pmc_rand_normal_gsl
        rand_normal = real(harvest, kind=dp)
        z0 = (rand_normal - mean)/ stddev
        if (present(prob_threshold)) then
-          if (1.0d0 - abs(erf(z0/(2.0**.5))) >= prob_threshold) acceptable = .true.
+          if (1.0d0 - abs(erf(z0/(2.0**.5))) >= prob_threshold) then
+             acceptable = .true.
+          end if
        else
           acceptable = .true.
        end if