run the CWL v1.2.1 conformance tests #1894
Workflow file for this run
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| name: CI Tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| concurrency: | |
| group: build-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| TOX_SKIP_MISSING_INTERPRETERS: False | |
| # Rich (pip) | |
| FORCE_COLOR: 1 | |
| # Tox | |
| PY_COLORS: 1 | |
| # Mypy (see https://github.com/python/mypy/issues/7771) | |
| TERM: xterm-color | |
| MYPY_FORCE_COLOR: 1 | |
| MYPY_FORCE_TERMINAL_WIDTH: 200 | |
| # Pytest | |
| PYTEST_ADDOPTS: --color=yes | |
| jobs: | |
| conformance_tests: | |
| name: CWL conformance | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| matrix: | |
| cwl-version: [v1.0, v1.1, v1.2] | |
| container: [docker, singularity, podman] | |
| extras: [""] | |
| include: | |
| - cwl-version: v1.2 | |
| container: docker | |
| extras: "--fast-parser" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Singularity | |
| if: ${{ matrix.container == 'singularity' }} | |
| run: | | |
| wget --no-verbose https://github.com/sylabs/singularity/releases/download/v3.10.4/singularity-ce_3.10.4-jammy_amd64.deb | |
| sudo apt-get install -y ./singularity-ce_3.10.4-jammy_amd64.deb | |
| - name: Singularity cache | |
| if: ${{ matrix.container == 'singularity' }} | |
| uses: actions/cache@v3 | |
| with: | |
| path: sifcache | |
| key: singularity | |
| - name: Set up Podman | |
| if: ${{ matrix.container == 'podman' }} | |
| run: sudo rm -f /usr/bin/docker ; sudo apt-get install -y podman | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.12 | |
| cache: pip | |
| - name: "Test CWL ${{ matrix.cwl-version }} conformance" | |
| env: | |
| VERSION: ${{ matrix.cwl-version }} | |
| CONTAINER: ${{ matrix.container }} | |
| GIT_TARGET: ${{ matrix.cwl-version == 'v1.2' && '1.2.1_proposed' || 'main' }} | |
| CWLTOOL_OPTIONS: ${{ matrix.cwl-version == 'v1.2' && '--relax-path-checks' || '' }} ${{ matrix.extras }} | |
| run: ./conformance-test.sh | |
| - name: Archive test results | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: cwl-${{ matrix.cwl-version }}-${{ matrix.container }}${{ matrix.extras }}-conformance-results | |
| path: | | |
| **/cwltool_conf*.xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: false | |
| token: ${{ secrets.CODECOV_TOKEN }} |