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Update term readme
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cmaumet committed Apr 16, 2015
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Expand Up @@ -16,12 +16,12 @@ Thank you in advance for taking part in NIDM-Results term curation!
<tr><th>Curation Status</th><th>Issue/PR</th><th>Term</th></tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='AFNI's Legendre Polinomial Drift Model'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='AFNI's Legendre Polinomial Drift Model'"> [more] </a></td>
<td><b>afni:'AFNI's Legendre Polinomial Drift Model': </b>A drift model in which the drifts are modeled by a Legendre orthogonal polynomial basis added to the regression model</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='FSL's Gaussian Running Line Drift Model'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='FSL's Gaussian Running Line Drift Model'"> [more] </a></td>
<td><b>fsl:'FSL's Gaussian Running Line Drift Model': </b>A drift model in which the drifts are modeled with a Gaussian-weighted running line smoother, fit to and subtracted from the data and each column of the design matrix</td>
</tr>
<tr>
Expand All @@ -36,12 +36,12 @@ Thank you in advance for taking part in NIDM-Results term curation!
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='Drift Model'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Drift Model'"> [more] </a></td>
<td><b>nidm:'Drift Model': </b>A model used to compensate for low frequency baseline drifts when analyzing functional MRI data at the subject level</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='SPM's DCT Drift Model'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='SPM's DCT Drift Model'"> [more] </a></td>
<td><b>spm:'SPM's DCT Drift Model': </b>A drift model in which the drifts are modeled by a Discrete Cosine Transform basis added to regression model</td>
</tr>
<tr>
Expand Down Expand Up @@ -217,34 +217,38 @@ Discussed with @afni-rickr in <a href="https://github.com/incf-nidash/nidm/pull/
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/yellow.png?raw=true"/> </td>
<td>Under discussion at <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Arbitrarily Correlated Error'"> [more] </a></td>
<td><b>nidm:'Arbitrarily Correlated Error': </b>&lt;undefined&gt; (editor: TN)</td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/306">#306</a> and <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Arbitrarily Correlated Error'"> [more] </a></td>
<td><b>nidm:'Arbitrarily Correlated Error': </b>&lt;undefined&gt;</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/yellow.png?raw=true"/> </td>
<td>Under discussion at <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Compound Symmetric Error'"> [more] </a></td>
<td><b>nidm:'Compound Symmetric Error': </b>&lt;undefined&gt; (editor: TN)</td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/306">#306</a> and <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Compound Symmetric Error'"> [more] </a></td>
<td><b>nidm:'Compound Symmetric Error': </b>&lt;undefined&gt;</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/yellow.png?raw=true"/> </td>
<td>Under discussion at: <a href="https://github.com/ISA-tools/stato/pull/23">ISA-tools/stato#23</a>
Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Contrast Weights'"> [more] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/305">#305</a>, also discussed at <a href="https://github.com/ISA-tools/stato/pull/23">ISA-tools/stato#23</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Contrast Weights'"> [more] </a></td>
<td><b>nidm:'Contrast Weights': </b>Vector defining the linear combination associated with a particular contrast. </td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/yellow.png?raw=true"/> </td>
<td>Under discussion at <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Exchangeable Error'"> [more] </a></td>
<td><b>nidm:'Exchangeable Error': </b>&lt;undefined&gt; (editor: TN)</td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/306">#306</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Error Dependence'"> [more] </a></td>
<td><b>nidm:'Error Dependence': </b>Dependence structure of the error, used as part of model estimation</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/yellow.png?raw=true"/> </td>
<td>Under discussion at <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Independent Error'"> [more] </a></td>
<td><b>nidm:'Independent Error': </b>&lt;undefined&gt; (editor: TN)</td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/306">#306</a> and <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Exchangeable Error'"> [more] </a></td>
<td><b>nidm:'Exchangeable Error': </b>&lt;undefined&gt;</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/yellow.png?raw=true"/> </td>
<td>Under discussion at <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Serially Correlated Error'"> [more] </a></td>
<td><b>nidm:'Serially Correlated Error': </b>&lt;undefined&gt; (editor: TN)</td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/306">#306</a> and <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Independent Error'"> [more] </a></td>
<td><b>nidm:'Independent Error': </b>&lt;undefined&gt;</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/yellow.png?raw=true"/> </td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/306">#306</a> and <a href="https://github.com/ISA-tools/stato/pull/28">ISA-tools/stato#28</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Serially Correlated Error'"> [more] </a></td>
<td><b>nidm:'Serially Correlated Error': </b>&lt;undefined&gt;</td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
Expand All @@ -263,7 +267,7 @@ Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='Resels Per Voxel Map'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/307">#307</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='Resels Per Voxel Map'"> [more] </a></td>
<td><b>nidm:'Resels Per Voxel Map': </b>A map whose value at each location is the number of resels per voxel. </td>
</tr>
<tr>
Expand Down Expand Up @@ -291,28 +295,28 @@ Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash
<tr><th>Curation Status</th><th>Issue/PR</th><th>Term</th><th>Domain</th><th>Range</th></tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='AFNI's drift Basis Order'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='AFNI's drift Basis Order'"> [more] </a></td>
<td><b>afni:'AFNI's drift Basis Order': </b>The number of basis in the drift model</td>
<td>afni:LegendrePolynomialDriftModel </td>
<td>xsd:int </td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='FSL's Drift Cut-off Period'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='FSL's Drift Cut-off Period'"> [more] </a></td>
<td><b>fsl:'FSL's Drift Cut-off Period': </b>Full Width at Half Maximum in seconds of the Gaussian weight function used in the running line smoother</td>
<td>fsl:GaussianRunningLineDriftModel </td>
<td>xsd:float </td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='cluster Size In Voxels'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/308">#308</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='cluster Size In Voxels'"> [more] </a></td>
<td><b>nidm:'cluster Size In Voxels': </b>Number of voxels that make up the cluster</td>
<td>nidm:NIDM_0000026 nidm:NIDM_0000070 </td>
<td>xsd:positiveInteger </td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='expected Number Of Clusters'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/309">#309</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='expected Number Of Clusters'"> [more] </a></td>
<td><b>nidm:'expected Number Of Clusters': </b>Expected number of clusters in an excursion set</td>
<td>nidm:NIDM_0000068 </td>
<td></td>
Expand All @@ -326,7 +330,7 @@ Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='has Drift Model'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='has Drift Model'"> [more] </a></td>
<td><b>nidm:'has Drift Model': </b>A property that associates a drift model to a design matrix (only used for first-level fMRI experiments)</td>
<td>nidm:NIDM_0000019 </td>
<td>nidm:NIDM_0000087 </td>
Expand All @@ -347,7 +351,7 @@ Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/green.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='SPM's Drift Cut-off Period'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/298">#298</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='SPM's Drift Cut-off Period'"> [more] </a></td>
<td><b>spm:'SPM's Drift Cut-off Period': </b>Discrete Cosine Transform basis cut-off, specified as period length in seconds and ensures that all basis elements will have period of this duration or longer</td>
<td>spm:DCTDriftModel </td>
<td>xsd:float </td>
Expand Down Expand Up @@ -516,14 +520,14 @@ Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='expected Number Of Vertices Per Cluster'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/309">#309</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='expected Number Of Vertices Per Cluster'"> [more] </a></td>
<td><b>nidm:'expected Number Of Vertices Per Cluster': </b>Expected number of vertices in a cluster</td>
<td>nidm:NIDM_0000068 </td>
<td></td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='expected Number Of Voxels Per Cluster'"> [find issues/PR] </a></td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/309">#309</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q='expected Number Of Voxels Per Cluster'"> [more] </a></td>
<td><b>nidm:'expected Number Of Voxels Per Cluster': </b>Expected number of voxels in a cluster</td>
<td>nidm:NIDM_0000068 </td>
<td></td>
Expand Down

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