Change how nested objects are indexed (#404) #1085
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| name: CI | |
| # This will run when: | |
| # - a new release is created, and will attach the generated | |
| # artifacts to the release | |
| # - when new code is pushed to master/develop to make sure the | |
| # code does compile. | |
| # - when a pull request is created and updated to make sure the | |
| # code does compile. | |
| on: | |
| release: | |
| types: created | |
| push: | |
| branches: | |
| - master | |
| - develop | |
| pull_request: | |
| # The jobs are chained, the first thing that is run is the code to | |
| # update all the dependencies (which are cached). The cache is | |
| # linked to the project/Build.scala file, if this changes the cache | |
| # is invalidated. | |
| # Once build is done it will start the test, dist and documentation | |
| # phases (which are executed in parallel). | |
| jobs: | |
| # downloads all the dependencies and compiles the scala code | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: github branch | |
| run: | | |
| if [ "${{ github.event.release.target_commitish }}" != "" ]; then | |
| BRANCH="${{ github.event.release.target_commitish }}" | |
| else | |
| BRANCH=${GITHUB_REF##*/} | |
| fi | |
| echo "GITHUB_BRANCH=${BRANCH}" >> $GITHUB_ENV | |
| if [ "$BRANCH" == "master" ]; then | |
| echo "CLOWDER_VERSION=$(awk '/version = / { print $4 }' project/Build.scala | sed 's/"//g')" >> $GITHUB_ENV | |
| elif [ "$BRANCH" == "develop" ]; then | |
| echo "CLOWDER_VERSION=develop" >> $GITHUB_ENV | |
| else | |
| echo "CLOWDER_VERSION=testing" >> $GITHUB_ENV | |
| fi | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 8 | |
| - name: Cache SBT ivy cache | |
| uses: actions/cache@v1 | |
| with: | |
| path: ~/.ivy2/cache | |
| key: ${{ runner.os }}-sbt-ivy-cache-${{ hashFiles('project/Build.scala') }} | |
| - name: Cache SBT | |
| uses: actions/cache@v1 | |
| with: | |
| path: ~/.sbt | |
| key: ${{ runner.os }}-sbt-${{ hashFiles('project/Build.scala') }} | |
| - name: sbt clean update | |
| run: ./sbt clean update | |
| env: | |
| BRANCH: ${{ env.GITHUB_BRANCH }} | |
| VERSION: ${{ env.CLOWDER_VERSION }} | |
| BUILDNUMBER: ${{ github.run_number }} | |
| GITSHA1: ${{ github.sha }} | |
| - name: sbt compile | |
| run: ./sbt compile | |
| env: | |
| BRANCH: ${{ env.GITHUB_BRANCH }} | |
| VERSION: ${{ env.CLOWDER_VERSION }} | |
| BUILDNUMBER: ${{ github.run_number }} | |
| GITSHA1: ${{ github.sha }} | |
| # starts a mongodb instance, and runs the scala tests | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| services: | |
| mongodb: | |
| image: mongo:3.6 | |
| ports: | |
| - 27017:27017 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: github branch | |
| run: | | |
| if [ "${{ github.event.release.target_commitish }}" != "" ]; then | |
| BRANCH="${{ github.event.release.target_commitish }}" | |
| else | |
| BRANCH=${GITHUB_REF##*/} | |
| fi | |
| echo "GITHUB_BRANCH=${BRANCH}" >> $GITHUB_ENV | |
| if [ "$BRANCH" == "master" ]; then | |
| echo "CLOWDER_VERSION=$(awk '/version = / { print $4 }' project/Build.scala | sed 's/"//g')" >> $GITHUB_ENV | |
| elif [ "$BRANCH" == "develop" ]; then | |
| echo "CLOWDER_VERSION=develop" >> $GITHUB_ENV | |
| else | |
| echo "CLOWDER_VERSION=testing" >> $GITHUB_ENV | |
| fi | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 8 | |
| - name: Cache SBT ivy cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.ivy2/cache | |
| key: ${{ runner.os }}-sbt-ivy-cache-${{ hashFiles('project/Build.scala') }} | |
| - name: Cache SBT | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.sbt | |
| key: ${{ runner.os }}-sbt-${{ hashFiles('project/Build.scala') }} | |
| - name: sbt test | |
| run: ./sbt "test-only integration.APITestSuite" | |
| env: | |
| BRANCH: ${{ env.GITHUB_BRANCH }} | |
| VERSION: ${{ env.CLOWDER_VERSION }} | |
| BUILDNUMBER: ${{ github.run_number }} | |
| GITSHA1: ${{ github.sha }} | |
| # creates zip file of the dist compiled version. The results are | |
| # uploaded as artifacts for this build as well to the release if | |
| # created. | |
| dist: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: github branch | |
| run: | | |
| if [ "${{ github.event.release.target_commitish }}" != "" ]; then | |
| BRANCH="${{ github.event.release.target_commitish }}" | |
| else | |
| BRANCH=${GITHUB_REF##*/} | |
| fi | |
| echo "GITHUB_BRANCH=${BRANCH}" >> $GITHUB_ENV | |
| if [ "$BRANCH" == "master" ]; then | |
| echo "CLOWDER_VERSION=$(awk '/version = / { print $4 }' project/Build.scala | sed 's/"//g')" >> $GITHUB_ENV | |
| elif [ "$BRANCH" == "develop" ]; then | |
| echo "CLOWDER_VERSION=develop" >> $GITHUB_ENV | |
| else | |
| echo "CLOWDER_VERSION=testing" >> $GITHUB_ENV | |
| fi | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 8 | |
| - name: Cache SBT ivy cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.ivy2/cache | |
| key: ${{ runner.os }}-sbt-ivy-cache-${{ hashFiles('project/Build.scala') }} | |
| - name: Cache SBT | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.sbt | |
| key: ${{ runner.os }}-sbt-${{ hashFiles('project/Build.scala') }} | |
| - name: sbt dist | |
| run: ./sbt dist | |
| env: | |
| BRANCH: ${{ env.GITHUB_BRANCH }} | |
| VERSION: ${{ env.CLOWDER_VERSION }} | |
| BUILDNUMBER: ${{ github.run_number }} | |
| GITSHA1: ${{ github.sha }} | |
| - name: fix log4j | |
| run: | | |
| ZIPFILE=$(ls -1rt target/universal/*.zip | head -1) | |
| DIR=$(basename ${ZIPFILE} .zip) | |
| unzip -q ${ZIPFILE} | |
| for x in $(find ${DIR} -name \*.jar); do | |
| zip -d $x org/apache/log4j/net/JMSAppender.class org/apache/log4j/net/SocketServer.class | grep 'deleting:' && echo "fixed $x" | |
| done | |
| rm ${ZIPFILE} | |
| zip -r ${ZIPFILE} ${DIR} | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: clowder.zip | |
| path: target/universal/clowder-*.zip | |
| - name: Upload files to a GitHub release | |
| if: github.event_name == 'release' && github.event.action == 'created' | |
| uses: svenstaro/[email protected] | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| overwrite: true | |
| asset_name: clowder.zip | |
| file: target/universal/clowder-*.zip | |
| file_glob: true | |
| - name: Upload dist to NCSA | |
| if: github.event_name == 'push' | |
| uses: robkooper/sftp-action@master | |
| with: | |
| host: ${{ secrets.SCP_HOST }} | |
| username: ${{ secrets.SCP_USERNAME }} | |
| key: ${{ secrets.SCP_KEY }} | |
| files: "target/universal/clowder-*.zip" | |
| target: "CATS/${{ env.CLOWDER_VERSION }}/files" | |
| # creates scaladoc, html and epub (no pdflatex) and uploads those | |
| # as artifacts for this build as well to the release if created. | |
| documentation: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: github branch | |
| run: | | |
| if [ "${{ github.event.release.target_commitish }}" != "" ]; then | |
| BRANCH="${{ github.event.release.target_commitish }}" | |
| else | |
| BRANCH=${GITHUB_REF##*/} | |
| fi | |
| echo "GITHUB_BRANCH=${BRANCH}" >> $GITHUB_ENV | |
| if [ "$BRANCH" == "master" ]; then | |
| echo "CLOWDER_VERSION=$(awk '/version = / { print $4 }' project/Build.scala | sed 's/"//g')" >> $GITHUB_ENV | |
| elif [ "$BRANCH" == "develop" ]; then | |
| echo "CLOWDER_VERSION=develop" >> $GITHUB_ENV | |
| else | |
| echo "CLOWDER_VERSION=testing" >> $GITHUB_ENV | |
| fi | |
| - uses: actions/setup-java@v3 | |
| with: | |
| distribution: 'zulu' | |
| java-version: 8 | |
| - name: Cache SBT ivy cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.ivy2/cache | |
| key: ${{ runner.os }}-sbt-ivy-cache-${{ hashFiles('project/Build.scala') }} | |
| - name: Cache SBT | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.sbt | |
| key: ${{ runner.os }}-sbt-${{ hashFiles('project/Build.scala') }} | |
| - name: Set up Python 3.7 | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.7 | |
| - name: sbt doc | |
| run: ./sbt doc | |
| env: | |
| BRANCH: ${{ env.GITHUB_BRANCH }} | |
| VERSION: ${{ env.CLOWDER_VERSION }} | |
| BUILDNUMBER: ${{ github.run_number }} | |
| GITSHA1: ${{ github.sha }} | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: ScalaDoc | |
| path: target/scala-*/api/ | |
| - name: Upload scaladoc to NCSA | |
| if: github.event_name == 'push' | |
| uses: robkooper/sftp-action@master | |
| with: | |
| host: ${{ secrets.SCP_HOST }} | |
| username: ${{ secrets.SCP_USERNAME }} | |
| key: ${{ secrets.SCP_KEY }} | |
| files: "target/scala-*/api/*" | |
| target: "CATS/${{ env.CLOWDER_VERSION }}/documentation/scaladoc" | |
| - name: sphinx | |
| run: | | |
| cd doc/src/sphinx/ | |
| python -m pip install -r requirements.txt | |
| make html epub | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: HTML Documentation | |
| path: doc/src/sphinx/_build/html | |
| - name: Upload sphinx to NCSA | |
| if: github.event_name == 'push' | |
| uses: robkooper/sftp-action@master | |
| with: | |
| host: ${{ secrets.SCP_HOST }} | |
| username: ${{ secrets.SCP_USERNAME }} | |
| key: ${{ secrets.SCP_KEY }} | |
| files: "doc/src/sphinx/_build/html/*" | |
| target: "CATS/${{ env.CLOWDER_VERSION }}/documentation/sphinx" | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: EPUB Documentation | |
| path: doc/src/sphinx/_build/epub/Clowder.epub | |
| - name: Upload files to a GitHub release | |
| if: github.event_name == 'release' && github.event.action == 'created' | |
| uses: svenstaro/[email protected] | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| tag: ${{ github.ref }} | |
| overwrite: true | |
| asset_name: clowder.epub | |
| file: doc/src/sphinx/_build/epub/Clowder.epub | |
| - name: Upload epub to NCSA | |
| if: github.event_name == 'push' | |
| uses: robkooper/sftp-action@master | |
| with: | |
| host: ${{ secrets.SCP_HOST }} | |
| username: ${{ secrets.SCP_USERNAME }} | |
| key: ${{ secrets.SCP_KEY }} | |
| files: "doc/src/sphinx/_build/epub/Clowder.epub" | |
| target: "CATS/${{ env.CLOWDER_VERSION }}/files" |