[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

.gitignore

@@ -14,20 +14,20 @@ CLIJ*.txt
 *~*
 *.swp
 
-# Maven 
+# Maven
 target/
 
-# Eclipse 
+# Eclipse
 .classpath
 .project
 .settings/
 /.metadata
 /.recommenders
 
-# vscode 
+# vscode
 .vscode/
 
-# binaries 
+# binaries
 *.class
 *.exp
 *.obj
@@ -36,7 +36,7 @@ target/
 # java cpp
 cppbuild
 
-# CMake 
+# CMake
 CMakeCache.txt
 CMakeFiles
 CMakeScripts
@@ -56,4 +56,3 @@ __pycache__/
 *.egg-info
 python/dist
 python/lib
-

.pre-commit-config.yaml

@@ -11,4 +11,4 @@ repos:
     -   id: check-case-conflict
     -   id: check-merge-conflict
     -   id: check-symlinks
-    -   id: mixed-line-ending
+    -   id: mixed-line-ending

README.md

@@ -9,7 +9,7 @@ The current build instructions are for early adapters to test and give us feedba
 ## pre-requisites
 ### Install a c++ compiler
 
-For windows look at the [CLIc_prototype windows build guide](https://github.com/clEsperanto/CLIc_prototype/blob/master/docs/how_to_build/windows_build/windows_build.md) and install Microsoft Build tools (or Visual Studio Community edition) as explained [here](https://biapol.github.io/blog/robert_haase/ms_build_tools/readme.html). 
+For windows look at the [CLIc_prototype windows build guide](https://github.com/clEsperanto/CLIc_prototype/blob/master/docs/how_to_build/windows_build/windows_build.md) and install Microsoft Build tools (or Visual Studio Community edition) as explained [here](https://biapol.github.io/blog/robert_haase/ms_build_tools/readme.html).
 Hint: during installation, activate Windows C++ development.
 
 ### Install OpenCL
@@ -26,7 +26,7 @@ Add the folder where "cl.exe" lives to the PATH, e.g. this one:
 C:\Program Files (x86)\Microsoft Visual Studio\2019\BuildTools\VC\Tools\MSVC\14.29.30133\bin\Hostx64\x64
 ```
 
-Follow the instructions to build [CLIc](https://github.com/clEsperanto/CLIc_prototype/blob/master/docs/how_to_build/windows_build/windows_build.md). 
+Follow the instructions to build [CLIc](https://github.com/clEsperanto/CLIc_prototype/blob/master/docs/how_to_build/windows_build/windows_build.md).
 Make sure when setting up CMAKE, that it is built into this directory as explained [here](https://github.com/clEsperanto/CLIc_prototype/blob/master/docs/how_to_build/windows_build/windows_build.md).
 
 ```
@@ -64,8 +64,8 @@ Download and install [cmake](https://cmake.org/download/).
 
 Get [CLIc_prototype](https://github.com/clEsperanto/CLIc_prototype) and put code in the same directory as ```clesperantoj_prototype```.
 
-Build and install using ```CLIc_prototype/build``` as the folder to place the build files generated by cmake 
-and ```CLIc_prototype/bin``` as the installation folder where the binaries will be placed.  
+Build and install using ```CLIc_prototype/build``` as the folder to place the build files generated by cmake
+and ```CLIc_prototype/bin``` as the installation folder where the binaries will be placed.
 It is important to use this code and installation folder as ```clesperantoj_protyotype``` uses them as include and link paths.
 
 If using the cmake windows GUI and Visual Studio GUI
@@ -97,7 +97,7 @@ mvn
 
 ## Running the prototype
 
-After the build succeeded, you can run the main functions in [this package](https://github.com/clEsperanto/clesperantoj_prototype/tree/main/src/main/java/net/clesperanto/test) and play with clesperantoj. 
+After the build succeeded, you can run the main functions in [this package](https://github.com/clEsperanto/clesperantoj_prototype/tree/main/src/main/java/net/clesperanto/test) and play with clesperantoj.
 This is recommended to do from an IDE such as IntellIJ by clicking on the green triangle next to the main function:
 
 ![img.png](developer_docs/intellij_screenshot.png)
@@ -108,7 +108,7 @@ This is recommended to do from an IDE such as IntellIJ by clicking on the green
 
 * Sometimes we had to make a trivial change to [clesperantoj][https://github.com/clEsperanto/clesperantoj_prototype/blob/javacpp/src/main/java/net/clesperanto/clicwrapper/clesperantoj.java], like adding a space, to activate the parser that generated the java wrapper.)
 
-* In some cases, the build fails when executed the first time. 
+* In some cases, the build fails when executed the first time.
 You find a potential workaround explained [here](https://github.com/clEsperanto/clesperantoj_prototype/issues/4#issuecomment-1184768674).
 
 * You may need to add the src/gen/java path to the java build path in your IDE.

guideline.md

@@ -17,7 +17,7 @@ We will need the following tools installed and available in the path:
 
 Most of those software will propose to be added to the path during installation. If not, you will need to add them manually.
 
-#### **_For windows:_**  
+#### **_For windows:_**
 To do so, open the "System" control panel, then "Advanced system settings", then "Environment Variables". In the "System variables" section, edit the "Path" variable and add the path to the executables.
 E.g. for maven, you will need to add `C:\Program Files\apache-maven-3.6.0\bin` to the path.
 
@@ -55,7 +55,7 @@ The project is structured as follow:
 
 * Sometimes we had to make a trivial change to [clesperantoj](https://github.com/clEsperanto/clesperantoj_prototype/blob/javacpp/src/main/java/net/clesperanto/clicwrapper/clesperantoj.java), like adding a space, to activate the parser that generated the java wrapper.)
 
-* In some cases, the build fails when executed the first time. 
+* In some cases, the build fails when executed the first time.
 You find a potential workaround explained [here](https://github.com/clEsperanto/clesperantoj_prototype/issues/4#issuecomment-1184768674).
 
 * You may need to add the src/gen/java path to the java build path in your IDE.
@@ -65,4 +65,4 @@ You find a potential workaround explained [here](https://github.com/clEsperanto/
         1.  Go to Project -> Properties -> Java Build Path -> Source (tab). Then add src/main as a source folder.
         2. Right-clicking your project, then click Properties.
         3. In the left pane, click Java Build Path . In the right pane, select the Source tab.
-        4. Here you can add/edit/remove source folders.
+        4. Here you can add/edit/remove source folders.

native/CMakeLists.txt

@@ -6,4 +6,3 @@ message(STATUS "ClesperantoJ and TEST")
 
 add_subdirectory(clesperantoj)
 add_subdirectory(clesperantoj_test)
-

native/clesperantoj/cppbuild.sh

@@ -17,14 +17,14 @@ case $PLATFORM in
             #    -DCMAKE_CXX_COMPILER="/usr/bin/g++" \
             #    -DCMAKE_CUDA_HOST_COMPILER="/usr/bin/g++" \
             #    -DOPENCL_INCLUDE_DIR="/usr/local/cuda/include/" \
-		# -DCLFFT_LIBRARY_DIR="/opt/OpenCL/clFFT-2.12.2-Linux-x64/lib64/" .. 
-        make -j 
+		# -DCLFFT_LIBRARY_DIR="/opt/OpenCL/clFFT-2.12.2-Linux-x64/lib64/" ..
+        make -j
         make install
         ;;
     macosx-*)
         # the following line might not be necessary if make would be properly installed in the path
         # CMAKE=/Applications/CMake.app/Contents/bin/cmake
-        
+
         $CMAKE -DCMAKE_BUILD_TYPE=Release \
                -DCMAKE_INSTALL_PREFIX="../../../lib/macosx/" ..
         #        -DCMAKE_CXX_COMPILER="g++" \
@@ -41,13 +41,11 @@ case $PLATFORM in
             #   -DOpenCL_LIBRARY="C:/Program Files (x86)/OCL_SDK_Light/lib/x86_64/opencl.lib" ..
             #    -DCLIC_INCLUDE_DIR="../../../CLIc_prototype/clic/include/core" \
             #    -DOCLCL_INCLUDE_DIR="../../../CLIc_prototype/thirdparty/opencl/ocl-clhpp/include" \
-		    #    -DCLFFT_LIBRARY_DIR="C:/OpenCL/clFFT-2.12.2-Windows-x64/lib64/import/" .. 
+		    #    -DCLFFT_LIBRARY_DIR="C:/OpenCL/clFFT-2.12.2-Windows-x64/lib64/import/" ..
         nmake
         nmake install
         ;;
     *)
         echo "Error: Platform \"$PLATFORM\" is not supported"
         ;;
 esac
-
-

native/clesperantoj_test/CMakeLists.txt

@@ -6,4 +6,4 @@ message(STATUS "TEST")
 
 add_executable(clesperantoj_test clictest.cpp)
 
-target_link_libraries(clesperantoj_test PUBLIC clesperantoj::clesperantoj)
+target_link_libraries(clesperantoj_test PUBLIC clesperantoj::clesperantoj)

native/clesperantoj_test/clictest.cpp

@@ -15,4 +15,4 @@ int main()
     clesperanto.getDeviceInfo();
 
     return 0;
-}
+}

pom.xml

@@ -101,7 +101,7 @@
 
 
 
-    <dependencies> 
+    <dependencies>
         <!-- ImageJ dependencies -->
 		<dependency>
 			<groupId>net.imagej</groupId>
@@ -152,7 +152,7 @@
 							<workingDirectory>${project.basedir}/native</workingDirectory>
 						</configuration>
 					</execution>
-				</executions> 
+				</executions>
 			</plugin>
 	        <plugin>
 	       		<groupId>org.codehaus.mojo</groupId>
@@ -223,14 +223,14 @@
 						<!-- link path to the OpenCL library
 						This provide the library path for javacpp to link to.
 						It (should) avoid the need to add the linkpath in the presets.
-						NB: Only needed on Windows unless the LIB env var contains the 
+						NB: Only needed on Windows unless the LIB env var contains the
 						path to OpenCL lib  and teh path to Windows Kit-->
 					</linkPaths>
 					<copyLibs>true</copyLibs>
 				</configuration>
-		
+
 				<executions>
-		
+
 					<!--  1. Parse the c++ header files specified in java files to generate java wrapper classes -->
 				  	<execution>
 						<id>javacpp-parser</id>
@@ -246,7 +246,7 @@
 							</classOrPackageNames>
 						</configuration>
 					</execution>
-		
+
 		             <!-- 2. Process classes generated in step 1 to create c++ wrapper library -->
 				  	<execution>
 						<id>process-classes</id>
@@ -260,11 +260,11 @@
 								<classOrPackageName>net.clesperanto.wrapper.kernelj</classOrPackageName>
 							</classOrPackageNames>
 						</configuration>
-					</execution> 
-		
+					</execution>
+
 		        </executions>
 			</plugin>
-			
+
 			<!-- Test plugin -->
 	        <plugin>
 				<groupId>org.apache.maven.plugins</groupId>
@@ -274,7 +274,7 @@
 					<argLine>-Xmx2G</argLine>
 				</configuration>
 			</plugin>
-		
+
 		</plugins>
 	</build>
 

src/main/java/net/clesperanto/presets/clesperantoj.java

@@ -46,4 +46,4 @@ public void map(InfoMap infoMap) {
 
 		infoMap.put(new Info("cle::Array", "cle::Device", "cle::BackendManager", "cle::Backend").skip());
 	}
-}
+}

src/main/java/net/clesperanto/presets/kernelj.java

@@ -19,4 +19,4 @@ public class kernelj implements InfoMapper {
     public void map(InfoMap infoMap) {
 
     }
-}
+}